1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatttgatcctgtgcatatgcagcaattacatgcctgggaagataaggttattctttatatgtacctgagtgatgaactgaacaaaaactcatttcttgtttggggtattcagCTAAAACGAATTTCAGTGCTGGGAGTCCTGAATCAAAAGATTCAATGCCAGAGTTCAGCATGGGCAATTGTCGGTTCTTCACTTATGAAGAATTGTATCA
species | Zea mays |
transcript | GRMZM2G355636_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGCTTCTTAATGCCTTCGCCTGCCTCGACTACTACACAAGTGCTAG CTAAAACGAATTTCAGTGCTGGGAGTCCTGAATCAAAAGATTCAATGCCAGEST: gi|26456215|gb|CA827798.1|CA827798
genomic: TGCTGGCTTCTTAATGCCTTCGCCTGCCTCGACTACTACACAAGTGCTAGgtaatttgat ... gggtattcagCTAAAACGAATTTCAGTGCTGGGAGTCCTGAATCAAAAGATTCAATGCCAG
EST: TGCTGGCTT-TTAATGCCTTCGCCTGCCTCGACTACTACACAAG-GCTAG CTAAAACGAATTTCAG-GCTGGGAGTCCTGAATCAAAAGATTCAATGCCAG
genomic: TGCTGGCTTCTTAATGCCTTCGCCTGCCTCGACTACTACACAAGTGCTAGgtaatttgat ... gggtattcagCTAAAACGAATTTCAGTGCTGGGAGTCCTGAATCAAAAGATTCAATGCCAG
tatgtacctgagtgatgaactgaacaaaaactcatttcttgtttggggtattcagCTAAAACGAATTTCAGTGCTGGGAGTCCTGAATCAAAAGATTCAATGCCAGAGTTCAGCATGGGCAATTGTCGGTTCTTCACTTATGAAGAATTGTATCA
aacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgatcctgtgcatatgcagcaattacatgcctgggaagataaggttattctttatatgtacctgagtgatgaactgaacaaaaactcatttcttgtttggggtattcagCTAAAACGAATTTCAGTGCTGGGAGTCCTGAATCAAAAGATTCAATGCCAGAGTTCAGCATGGGCAATTGTCGGTTCTTCACTTATGAAGAATTGTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA