1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaggatttttttgtctcaatgatattcaagaacagtccacaacatattcactactgagtcgcatgtgagtctgttcgcatctttatttttattggctgattcgtttaaacctcactgtgtacagGGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTTGCCACCTCCTAGGTCAACTATTGCAGCTGCTTTCAGTCCAGATGGAAAA
species | Zea mays |
transcript | GRMZM2G353548_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGAGTTAAGGTTTTCAGATGCAGATGCTAAACTTGGTATTTTATCTTG GGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|28873754|gb|CB329699.1|CB329699
genomic: ATTGAGTTAAGGTTTTCAGATGCAGATGCTAAACTTGGTATTTTATCTTGgtaaggattt ... ctgtgtacagGGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: ATTGAGTTAAGGTTTTCAGATGCAGATGCTAAACTTGGTATTTTATCTTG GGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|78106525|gb|DV524943.1|DV524943
genomic: ATTGAGTTAAGGTTTTCAGATGCAGATGCTAAACTTGGTATTTTATCTTGgtaaggattt ... ctgtgtacagGGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: ATTGAGTTAAGGTTTTCAGATGCAGATGCTAAACTTGGTATTTTATCTTG GGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTT
genomic: ATTGAGTTAAGGTTTTCAGATGCAGATGCTAAACTTGGTATTTTATCTTGgtaaggattt ... ctgtgtacagGGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTT
tctgttcgcatctttatttttattggctgattcgtttaaacctcactgtgtacagGGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTTGCCACCTCCTAGGTCAACTATTGCAGCTGCTTTCAGTCCAGATGGAAAA
acctcac putative branch site (score: 3)
cctcact CT-rich tract
atctttatttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatttttttgtctcaatgatattcaagaacagtccacaacatattcactactgagtcgcatgtgagtctgttcgcatctttatttttattggctgattcgtttaaacctcactgtgtacagGGCAGAATCACTGTCCCTGCATCGCTGGTCTGCCAAGTATTGCCCTCTTTTGCCACCTCCTAGGTCAACTATTGCAGCTGCTTTCAGTCCAGATGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA