1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagtttcccctcttgtttctctgtgtatgctgttatcagatttacctttgcacgataacttagcatataatctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACG
species | Zea mays |
transcript | GRMZM2G353213_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTEST: gi|148945681|gb|EC890953.2|EC890953
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTEST: gi|31348764|gb|CD433121.1|CD433121
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: GCTACTGGAACTGGTTTTCCACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTEST: gi|211025075|gb|FL063423.1|FL063423
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGGTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGGTEST: gi|71775481|gb|DR973359.1|DR973359
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTEST: gi|211025069|gb|FL063417.1|FL063417
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGNAGT-GGTGTAGCATTGTCTGTGGCGTEST: gi|71448507|gb|DR829557.1|DR829557
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGG-AGTTGGTGTAGCATTGTCTGTGGCGT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTEST: gi|91055447|gb|EB165865.1|EB165865
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTEST: gi|211025064|gb|FL063412.1|FL063412
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGNNAGT-GGTGTAGCATTGTCTGTGGCGTEST: gi|149109665|gb|EE293452.2|EE293452
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGG-AGTTGGTGTAGCATTGTCTGTGGCGT
EST: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATAT TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
genomic: TCTACTGGAACTGGTACACTACCTCCCATGCCACCCACATCATCATATATgtgagtttcc ... atctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTT
gtatgctgttatcagatttacctttgcacgataacttagcatataatctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACG
cgataac putative branch site (score: 52)
tctctgc putative PPT
atataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcccctcttgtttctctgtgtatgctgttatcagatttacctttgcacgataacttagcatataatctctgcagTGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG