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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgattgaacgtatgaagttgctagtaactacttaatagcaattctgtttactcttttccgccaccaatttcagGCTGTGAGTAGGGAGATTAGGAAGATACTGACCGAGAGGGCTAGATTCTCCAACATTGCTCTTGATGATGTCTCCATCACAAGCCTAAGCTTCGGGAGGG

Basic information

species Zea mays
transcript GRMZM2G352289_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352289_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g15880.1 (Oryza sativa), 3'ss of exon 3
-------------------------------gtacgattgaacgtatgaagttgctagtaactacttaatagcaattctgtttactcttttccgccaccaatttcagGCTGTGAGTAGGGAGATTAGGAAGATACTGACCGAGAGGGCTAGATTCTCCAACATTGCTCTTGATGATGTCTCCATCACAAGCCTAAGCTTCGGGAGGG
                                |    |   |  | ||| |  | |    | |||||    ||    ||   |  |  ||||   | |||| | ||| | |||||||||||||| || ||||||||||| |||||||| ||    |  || ||||| ||||||||||| |||||||||||||| |||||||| | ||
gttaagacctgaacatatgctttttatagtctttttttcttatatttgatgggggtcaacattacttgggggcg---ctaactgtttgtttcactctccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTAATATTGCCCTTGATGATGTGTCCATCACAAGCCTGAGCTTCGGAAAGG

upper sequence: GRMZM2G352289_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G03860.3 (Arabidopsis thaliana), 3'ss of exon 4
gtacgattgaacgtatgaagttgctagtaactacttaatagc--aattct----gtttactcttttccgccaccaatttcagGCTGTGAGTAGGGAGATTAGGAAGATACTGACCGAGAGGGCTAGATTCTCCAACATTGCTCTTGATGATGTCTCCATCACAAGCCTAAGCTTCGGGAGGG
|||||  |      ||    || |||  |  |   |  |       ||||    ||  ||||| ||   |   |   |  |||||||||| || |||||  | ||||| ||||| ||| |||||     ||   |||||||||||||||||||||||||||| |  || |  ||||| |  |
gtacgtatctcaacattctttttctacaacttttctgctcttttgtttctaatggtggactctgttt-actctctcctctagGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTCTAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTGACATTCGGCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctagtaactacttaatagcaattctgtttactcttttccgccaccaatttcagGCTGTGAGTAGGGAGATTAGGAAGATACTGACCGAGAGGGCTAGATTCTCCAACATTGCTCTTGATGATGTCTCCATCACAAGCCTAAGCTTCGGGAGGG
                                ctcttttccgccacc  CT-rich tract
          tacttaata  TA-rich tract