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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttttgggtttgaagttatatatttatttttgagtatgatttgtggtgatagctaaatatcttgaatatttcagGCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAG

Basic information

species Zea mays
transcript GRMZM2G350684_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018048_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G46710.1 (Glycine max), 3'ss of exon 18
--------------------------------gttctt-ttgggtttgaagttatatatttatttttgagtatgatttgtggtga-tagctaaatatc-ttgaatatttcagGCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAG
                                  |||| |   ||||     || ||||||    ||     ||| ||   |  | | | ||  |||  |  ||| || ||||| ||||||||||| || ||||||||||||| ||||||||| || |||||||| || |||||||  |   | || ||||||
gttgtctgttgttcgatagttatctcaacttaactcttgtcatgttttggagtaaatatttgaacttag---tgacttacagaaagttgttatctattatccaatgttgcagGCTCTTGTTGTCCTGGTGCATGATATGGGTCCAAACTGGGAGCTTGTTAGTGATGCTATCAACAGTACTATACAATTCAAG

upper sequence: GRMZM2G018048_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G36660.1 (Glycine max), 3'ss of exon 15
-----------------------------------gttcttttgggtttgaagttatatatttatttttgagtatgatttgtggtga-tagctaaatatc-ttgaatatttcagGCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAG
                                    || | |||  |||     || ||||||    ||    |||| |||     | | | ||  |||  |  ||| || ||||| ||||||||||| || |||||||||||||  |||||||| || |||| ||| || |||||||  |   | || ||||||
gttgtttgttgtttgttagttatctcaacttaacttttatgttgttttttggagtaaatatttcaactt---catgacttgcataaactggttatctattatccaatgttgcagGCTCTTGTTGTCCTGGTGCATGATATGGGTCCGAACTGGGAGCTTGTTAATGATGCCATCAACAGTACTATACAATTCAAG

upper sequence: GRMZM2G018048_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 15
----------gttcttttgggtttgaagttatatatttatttttgagt-------atgatttgtggtgatagctaaatatcttgaatatttcagGCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAG
           || || |   | ||| ||| | | |||  || | |||       |  |   ||| |||    | | ||   | | ||||  |||||||||| |||||||| ||||||||||||  ||| ||||| || || ||||| || ||||||| ||   | || ||||||
gttattcttcctttttctttttctgatgttgtcttttttattcttagtgatagaaagtaaaagtgctgaagttttactagtgttattattatagGCACTTGTGGTCCTTGTACATGATATGGGTGCAAATTGGGAGCTTGTAAGTGATGCTATCAACAGCACTCTCCAATTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttatttttgagtatgatttgtggtgatagctaaatatcttgaatatttcagGCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAG
                               agctaaa  putative branch site (score: 3)
                                  taaatatcttgaatat  TA-rich tract