Sequence
atgc intronic sequence ATGC exonic sequence...aagaatgtttaggtcatttgtattgttgaaaagcaatctcatgttagtggatttatatgacacaggactggatgaattcatatttaatcttgtcacacagGACAAGGAGTCTCGGGATTTGAACAATGAAGAGAAGATTGAGGTTGCTGGTAAGGAGAAACAGGAATGGAATGCATTGTTCAAATTGGACAAATATGCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G349810_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G46090.2 (Glycine max), 3'ss of exon 8
aagaatgtttaggtcatttgtattgttgaaaagcaatctcatgttagtg--gatttatatgaca--caggactggatgaattcatatttaatcttgtcacacagGACAAGGAGTCTCGGGATTTGAACAATGAAGAGAAGATTGAGGTTGCTGGTAAGGAGAAACAGGAATGGAATGCATTGTTCAAATTGGACAAATATGCTA
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-acttcccttttttcgtttgcacacttg---tccattttcatgctatggatgattattttggcagttttatctctagtaatcttaatctgttttctgccttcagGAGAAGGAGTCCTGGGATTTGAACACTGAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAGCATGCAA
upper sequence: GRMZM2G349810_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 8
aagaatgtttaggtcatttgtattgttgaaaagcaatctcatgttagtggatttata-tgacacaggactggatgaattcatatt---taatcttgtcacacagGACAAGGAGTCTCGGGATTTGAACAATGAAGAGAAGATTGAGGTTGCTGGTAAGGAGAAACAGGAATGGAATGCATTGTTCAAATTGGACAAATATGCTA
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------gtctgtaatatttttttcgtccaaatattctttttccacatgatatctatagtatttcataactaagttgacgtgtgttacctggcctattctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCAAGAAGAAGGAAGAAGGCAATGTGCTATTCAAGGCTGGTAAATATGCAA
upper sequence: GRMZM2G349810_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s0958g00020.t01 (Vitis vinifera), 3'ss of exon 4
aagaatgtttaggtcatttgtattgttgaaaagcaatctcatgttagtggatttata-tgacacaggactggatgaattcatatt---taatcttgtcacacagGACAAGGAGTCTCGGGATTTGAACAATGAAGAGAAGATTGAGGTTGCTGGTAAGGAGAAACAGGAATGGAATGCATTGTTCAAATTGGACAAATATGCTA
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------gtctgtaatatttgtttcgtctaaatattctttttcctcatgatatctataatatttcataactaagttgacatgtgttacctggcctattctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCAAGAAGAAGGAAGAAGGCAATGTGCTATTCAAGGCTGGTAAATATGCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtggatttatatgacacaggactggatgaattcatatttaatcttgtcacacagGACAAGGAGTCTCGGGATTTGAACAATGAAGAGAAGATTGAGGTTGCTGGTAAGGAGAAACAGGAATGGAATGCATTGTTCAAATTGGACAAATATGCTA
atttaat putative branch site (score: 4)
tcttgtc CT-rich tract
atgaattcatatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagaatgtttaggtcatttgtattgttgaaaagcaatctcatgttagtggatttatatgacacaggactggatgaattcatatttaatcttgtcacacagGACAAGGAGTCTCGGGATTTGAACAATGAAGAGAAGATTGAGGTTGCTGGTAAGGAGAAACAGGAATGGAATGCATTGTTCAAATTGGACAAATATGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - -tcatttg
- - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatat