1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttggtttggcacaaattaaacaaagaataagtttgaacatgttgaaggatatatgtaaaaaaaaacaaatcttaaccggagttgttgtttcttctgcagAGAAGCACTGAAGATGCATACCGATACGGAAGCTGGTGGTCAGTTTGGTGGACAGGGACATACAGCATGGTTCTTTCCAAAGCGGGGTTCTTCCACAAGA
species | Zea mays |
transcript | GRMZM2G347766_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aaggatatatgtaaaaaaaaacaaatcttaaccggagttgttgtttcttctgcagAGAAGCACTGAAGATGCATACCGATACGGAAGCTGGTGGTCAGTTTGGTGGACAGGGACATACAGCATGGTTCTTTCCAAAGCGGGGTTCTTCCACAAGA
tcttaac putative branch site (score: 14)
ttgttgtttcttct putative PPT
tatatgtaaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtttggcacaaattaaacaaagaataagtttgaacatgttgaaggatatatgtaaaaaaaaacaaatcttaaccggagttgttgtttcttctgcagAGAAGCACTGAAGATGCATACCGATACGGAAGCTGGTGGTCAGTTTGGTGGACAGGGACATACAGCATGGTTCTTTCCAAAGCGGGGTTCTTCCACAAGA
- - - - -gcacaaa
- - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt