1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gagatacagtaccgtacaaactatatctgtattttctaatgatgcatatggaattacttgatttattattggaatatttcattgtgcttttgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAG
species | Zea mays |
transcript | GRMZM2G347447_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atatggaattacttgatttattattggaatatttcattgtgcttttgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAG
acttgat putative branch site (score: 42)
cttttgttcc putative PPT
aattacttgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagatacagtaccgtacaaactatatctgtattttctaatgatgcatatggaattacttgatttattattggaatatttcattgtgcttttgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAG
- - - cagtacc
- - - - - - -gtacaaa
- - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - -atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttt