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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagatacagtaccgtacaaactatatctgtattttctaatgatgcatatggaattacttgatttattattggaatatttcattgtgcttttgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAG

Basic information

species Zea mays
transcript GRMZM2G347447_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347447_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 3'ss of exon 2
gagatacagtaccgtacaaactatatctgtattttctaatgatgcatatggaattac----ttgatttattattgg--aatatttcattgtgcttttgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAG
     |   ||   | ||      |   |||||   |   |  |||  || | ||||    |  |  | | ||||   |||| |    | |     || |   |||||||||||||| ||  | ||||||||| || ||||||||||  || ||||||||||||||||||||||||||||||| || || ||||||||||  || |
-----atgatattcttcatttgccagaagtattacatttaggagcacttgaatttacacactgaacatgtaattgtctaataatcagatatttacatgcttt-tagATCAAAGCACAAGATATCCATGTTGGAAATATAGTGTGGCTTTATCAGAATGATGAGATACCATGTGATCTTGTTCTTATAGGAACTTCTGATCCTCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93013258|gb|EB638778.1|EB638778
EST:     AAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAG                         ATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAAT
genomic: AAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttttttt ... tgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatggaattacttgatttattattggaatatttcattgtgcttttgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAG
          acttgat  putative branch site (score: 5)
                                         cttttgttcc  putative PPT
      aattacttgatttatt  TA-rich tract