1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttcaagtacgtaaccttttgcgtttcaagctggtgatgagattgaaacaagggtagatttatgaaataaataaacaaataattcgtggcgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAGCGGATGGGCGTCTCCGGCCGCGACGTCCCTCTGGAGACCCAGTTCATG
species | Zea mays |
transcript | GRMZM2G340656_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAEST: gi|74243842|gb|DT651756.1|DT651756
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAEST: gi|76012398|gb|DT939568.1|DT939568
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAEST: gi|149112695|gb|EE295528.2|EE295528
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAEST: gi|76916829|gb|DV166569.1|DV166569
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAEST: gi|76018506|gb|DT945676.1|DT945676
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
gaaacaagggtagatttatgaaataaataaacaaataattcgtggcgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAGCGGATGGGCGTCTCCGGCCGCGACGTCCCTCTGGAGACCCAGTTCATG
tagatttatgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcaagtacgtaaccttttgcgtttcaagctggtgatgagattgaaacaagggtagatttatgaaataaataaacaaataattcgtggcgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCAGCGGATGGGCGTCTCCGGCCGCGACGTCCCTCTGGAGACCCAGTTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - cttttgc
- - - - - - - - - - - - - - - gctggtg
- - - - - - - - - - - - - - - - - - - - - - - aaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa