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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgttggaagggatgacagtttcttattattattttattgccaaaaaaacgaactcgtttctcatttataaaggaaaatacaagtttgatatgactattttgttttctgattattgttgtgatgcagAGTTGTTCGGAATAGAGAG

Basic information

species Zea mays
transcript GRMZM2G334225_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771389|gb|DR969326.1|DR969326
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211397005|gb|FL238530.1|FL238530
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211397006|gb|FL238531.1|FL238531
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211397001|gb|FL238526.1|FL238526
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211520163|gb|FL238537.1|FL238537
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211397002|gb|FL238527.1|FL238527
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|74233594|gb|DT641508.1|DT641508
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211520159|gb|FL238533.1|FL238533
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211520162|gb|FL238536.1|FL238536
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211397004|gb|FL238529.1|FL238529
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211397003|gb|FL238528.1|FL238528
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211520161|gb|FL238535.1|FL238535
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGANGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|50333189|gb|CO528315.1|CO528315
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG
EST: gi|211520160|gb|FL238534.1|FL238534
EST:     GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG                         AGTTGTTCGGAATAGAGAG
genomic: GAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGGgtacgtacgt ... tgtgatgcagAGTTGTTCGGAATAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaaatacaagtttgatatgactattttgttttctgattattgttgtgatgcagAGTTGTTCGGAATAGAGAG
                                ttctgat  putative branch site (score: 3)
                       tattttgtttt  TA-rich tract