1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagagccctccatttgcacaacgatttgcttgctagtttttcaattgcgttgcgtgcgagtatgcaactgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAGCAGCCGACACAGCCGCTGCGGGTGTCCATCTCCAAGAAGCTACGGGCG
species | Zea mays |
transcript | GRMZM2G328908_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|148991813|gb|EE033399.2|EE033399
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|12046207|gb|BF728346.1|BF728346
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|148947609|gb|EC893089.2|EC893089
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|148928663|gb|EC873223.2|EC873223
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|7304624|gb|AW600563.1|AW600563
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGEST: gi|13198763|gb|BG354565.1|BG354565
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATG
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|13490371|gb|BG517135.1|BG517135
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|149081398|gb|EE170514.2|EE170514
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|149097400|gb|EE183253.2|EE183253
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|148996081|gb|EE035340.2|EE035340
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|116815101|gb|EC857735.1|EC857735
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGACGGCGAAGAACGTACCCCAEST: gi|6827348|gb|AW330991.1|AW330991
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|148934031|gb|EC878039.2|EC878039
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAEST: gi|149040129|gb|EE046780.2|EE046780
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
EST: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACAT GTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
genomic: GAGATGTTCAAGGCGCCGACTAACAACCTCGCCGACGGCGGGTACCACATgtgagagccc ... actgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCA
cgatttgcttgctagtttttcaattgcgttgcgtgcgagtatgcaactgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAGCAGCCGACACAGCCGCTGCGGGTGTCCATCTCCAAGAAGCTACGGGCG
tttttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagccctccatttgcacaacgatttgcttgctagtttttcaattgcgttgcgtgcgagtatgcaactgtgccagGTATAAAGACATGCTGGAGTGGATCGGCCGGCCGGCGAAGAACGTTCCCCAGCAGCCGACACAGCCGCTGCGGGTGTCCATCTCCAAGAAGCTACGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC