1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttgtacctaatcaaattggtctgatgcaattttggcgcttatttgatttcctttcttctgaccatttctttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATGTGCTTGACGAGTCAGTTAACAAGAAAAAAGAGAAGGCTACTACTGTTG
species | Zea mays |
transcript | GRMZM2G327635_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCTTTTGTCCACCTTTTACAGGATCTGAGGAACCGTAGTATACCTAAG TTTGGCTACCCA-CTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATEST: gi|32823188|gb|CD962910.1|CD962910
genomic: CGCCTTTTGTCCACCTTTTACAGGATCTGAGGAACCGTAGTATACCTAAGgtacttgtac ... ttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGAT
EST: GATCTGAGGAACCGTAGTATACCTAAG TTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATEST: gi|18450808|gb|BM429086.1|BM429086
genomic: GATCTGAGGAACCGTAGTATACCTAAGgtacttgtac ... ttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGAT
EST: CGCCTTTTGTCCACCTTTTACAGGATCTGAGGAACCGTAGTATACCTAAG TTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATEST: gi|87153575|gb|DY398364.1|DY398364
genomic: CGCCTTTTGTCCACCTTTTACAGGATCTGAGGAACCGTAGTATACCTAAGgtacttgtac ... ttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGAT
EST: AGGATCTGAGGAACCGTAGTATACCTAAG TTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATEST: gi|211242520|gb|FL257377.1|FL257377
genomic: AGGATCTGAGGAACCGTAGTATACCTAAGgtacttgtac ... ttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGAT
EST: CGCCTTTTGTCCACCTTTTACAGGATCTGAGGAACCGTAGTATACCTAAG TTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGEST: gi|32807933|gb|CD960167.1|CD960167
genomic: CGCCTTTTGTCCACCTTTTACAGGATCTGAGGAACCGTAGTATACCTAAGgtacttgtac ... ttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCG
EST: GATCTGAGGAACCGTACTATACCTAAG TTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGAT
genomic: GATCTGAGGAACCGTAGTATACCTAAGgtacttgtac ... ttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGAT
tgcaattttggcgcttatttgatttcctttcttctgaccatttctttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATGTGCTTGACGAGTCAGTTAACAAGAAAAAAGAGAAGGCTACTACTGTTG
ttctgac putative branch site (score: 106)
tttcctttcttctgac CT-rich tract
atttctttcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtacctaatcaaattggtctgatgcaattttggcgcttatttgatttcctttcttctgaccatttctttcattttagTTTGGCTACCCAACTCTGCGTGCATTTGTTGAGTTGATCTCTCAATTCGATGTGCTTGACGAGTCAGTTAACAAGAAAAAAGAGAAGGCTACTACTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA