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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagcatacatatatatgattgatgctgatgaatttgaatttgactgatctttccccttattgggtgggtgagggtgactgcagACCCGACGCGGTTCAGGTTCACCCACGAGACTTCCTTCGTGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATC

Basic information

species Zea mays
transcript GRMZM2G325653_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325653_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g09050.1 (Oryza sativa), 3'ss of exon 1
------------gttagtagcat-acatatatatgattgatgctgatgaatttgaatttgactgatctttccccttattgggtgggtgagggtgactgcagACCCGACGCGGTTCAGGTTCACCCACGAGACTTCCTTCGTGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATC
              || |   |  ||||  |||   | | ||| ||  |      |    ||| |  || | | | |||   |   ||      | |||||| ||||||  |||||| || || |||||||| || ||||| |||||||| ||||| ||||||||||||   || || || |||||||| 
tatttttatttaactatttataccacatgcatacagtaggtgcggaaaataccagaaaatact-actttccgcataattaactctatgcattgcattgcagATCCGACGAAGTTCAGATTTACTCACGAGACGTCGTTCGTCAGGCAGCACATGAACGTGCTGAACAAGACGCCGGCGTCGTTCTACATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatttgaatttgactgatctttccccttattgggtgggtgagggtgactgcagACCCGACGCGGTTCAGGTTCACCCACGAGACTTCCTTCGTGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATC
             gactgat  putative branch site (score: 3)
     ttgaattt  TA-rich tract