1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaacgcgctctcctacactacatacacatacacccgtacacgtcccaggttctcggcttaggcattgactttggcactctgcgctttcttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCCTCCGCGGGAA
species | Zea mays |
transcript | GRMZM2G322953_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGAACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCEST: gi|211164067|gb|FL013505.1|FL013505
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGAACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCEST: gi|22490108|gb|BU050031.1|BU050031
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGEST: gi|87152940|gb|DY397729.1|DY397729
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAG
EST: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCEST: gi|211164074|gb|FL013512.1|FL013512
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGAACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCEST: gi|211164075|gb|FL013513.1|FL013513
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGAACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGNCATCTTCGTCGACCCGGCCEST: gi|211164070|gb|FL013508.1|FL013508
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGEST: gi|18654939|gb|BM499744.1|BM499744
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGG
EST: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
cccaggttctcggcttaggcattgactttggcactctgcgctttcttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCCTCCGCGGGAA
cattgac putative branch site (score: 3)
ctctgcgctttctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgcgctctcctacactacatacacatacacccgtacacgtcccaggttctcggcttaggcattgactttggcactctgcgctttcttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCCCTCCGCGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG