1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagctgatgtcattatgcatgcatttttttgttgcatacacaaaataaacactgttctaatccgcattcttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAG
species | Zea mays |
transcript | GRMZM2G316635_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAG GACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGAEST: gi|22472441|gb|BU036921.1|BU036921
genomic: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatg ... cttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
EST: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAG GACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGAEST: gi|21088911|gb|BQ401224.1|BQ401224
genomic: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatg ... cttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
EST: TTGGGAAGCTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAC GACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
genomic: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatg ... cttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
tttttttgttgcatacacaaaataaacactgttctaatccgcattcttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAG
cattctt CT-rich tract
atacacaaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctgatgtcattatgcatgcatttttttgttgcatacacaaaataaacactgttctaatccgcattcttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG