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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatgagtaactaatgcatgggtctgtatactttaggggctcggtattaataaaactatgcacttattcttaaatttcagCTATGAAGTTGTTCTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCCAATATACTACTATGTATTCAACAGTCTTCTCTTCTCTCTACTTGTTCTA

Basic information

species Zea mays
transcript GRMZM2G315726_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315726_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g49590.1 (Oryza sativa), 3'ss of exon 4
-------gtaaagatgagta-actaatgcatgggtctgtatactttag---------gggctc---ggtattaataaaact-atgcacttattcttaaatttcagCTATGAAGTTGTTCTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCCAATATACTACTATGTATTCAACAGTCTTCTCTTCTCTCTACTTGTTCTA
        || |  | |||    | ||  | ||   | ||||||||||         ||  ||     |||   |||| || ||||  || |||| ||||||||||||||||||||||| ||   | |||||| | ||||||||  |||| || ||| || |||| |||||||||||| ||||||||||||| || |||||||||
gtagatactacatgttagtgtgttcatatacggagttctatactttagcctttagggggattctataatatcgctaaagcttatgcgtttcttctaaaatttcagCTATGAAGTTGTTCCGATGTTGGACAAGAAGAAGCATAAGTTTGATGGTCCACTACACTATTATGTATTCAACTGTCTTCTCTTCTCCCTCCTTGTTCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211123441|gb|FL433091.1|FL433091
EST:     GTACTCCTCCGCCTTATATATTATCCGTTCTGGATTCTCTGGAGCACGAG                         CTATGAAGTTGTTCTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCC
genomic: GTACTCCTCCGCCTTATATATTATCCGTTCTGGATTCTCTGGAGCACGAGgtaaagatga ... taaatttcagCTATGAAGTTGTTCTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCC
EST: gi|84969762|gb|DV170504.2|DV170504
EST:     GTACTCCTCCGCCTTATATATTATCCGTTCTGGATTCTCTGGAGCACGAG                         CTATGAAGTTGTTTTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCC
genomic: GTACTCCTCCGCCTTATATATTATCCGTTCTGGATTCTCTGGAGCACGAGgtaaagatga ... taaatttcagCTATGAAGTTGTTCTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatactttaggggctcggtattaataaaactatgcacttattcttaaatttcagCTATGAAGTTGTTCTGACTCTAGACAAGGAAAAGCATAAAGTTGACGGGCCAATATACTACTATGTATTCAACAGTCTTCTCTTCTCTCTACTTGTTCTA
                   tattaat  putative branch site (score: 2)
                                     cttattctt  putative PPT
                   tattaataaaactat  TA-rich tract