1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatgaggaaatacatctttagtgtggtggtatcttgttgtacttttttcttaaagaagatcggggaaacattacaaatattctctatttgttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAGGTTGTTAATTCAGGATTTCAG
species | Zea mays |
transcript | GRMZM2G315176_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATTATATGGGATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAG GGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAGEST: gi|194717074|gb|FK934227.1|FK934227
genomic: AGATTATATGGGATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAGgtaactatta ... ttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAG
EST: AGATTATATGGGATCTCAGGAGACCAGTTCCCATGAACAGACTTTTGCAG GGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAGEST: gi|32945931|gb|CF050750.1|CF050750
genomic: AGATTATATGGGATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAGgtaactatta ... ttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAG
EST: AGATTATATGGGATCTCAGGAGACCAGTTCCCATGAACTTACTCTTGCAG GGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGGGEST: gi|32806531|gb|CD958765.1|CD958765
genomic: AGATTATATGGGATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAGgtaactatta ... ttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAG
EST: GATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAG GGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAGEST: gi|32823764|gb|CD963486.1|CD963486
genomic: GATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAGgtaactatta ... ttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAG
EST: GATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAG GGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAG
genomic: GATCTCAGGAGACCAGTTCCCATGAACAGACTCTTGCAGgtaactatta ... ttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAG
tttcttaaagaagatcggggaaacattacaaatattctctatttgttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAGGTTGTTAATTCAGGATTTCAG
aaacattacaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgaggaaatacatctttagtgtggtggtatcttgttgtacttttttcttaaagaagatcggggaaacattacaaatattctctatttgttggtggcagGGGGATGTTGGTTGTGGAAAGACCATTGTTGCTTTCCTGGCATGTATGGAGGTTGTTAATTCAGGATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - -aaataca
- - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaga