1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtaatagcatcctgtcccgatacttttttgtgagatttgtcaaatactcctacgtaaatagaagtagaaatcatttttttcatttaagtcttctaatacctgatataatttattttgctactgatttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCAAATCTTGGTGAAGAATTTTCTCTTGATTCCCTCCCTCATTTAGACCGG
species | Zea mays |
transcript | GRMZM2G314386_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCEST: gi|32837769|gb|CD977447.1|CD977447
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGGEST: gi|148970703|gb|EE021421.2|EE021421
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCEST: gi|211311913|gb|FL092761.1|FL092761
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTCTCAGGG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCEST: gi|32838159|gb|CD977837.1|CD977837
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCEST: gi|211311911|gb|FL092759.1|FL092759
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCEST: gi|211311910|gb|FL092758.1|FL092758
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
EST: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGTG GTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
genomic: GCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGGgtatgtaata ... ttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGC
catttaagtcttctaatacctgatataatttattttgctactgatttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCAAATCTTGGTGAAGAATTTTCTCTTGATTCCCTCCCTCATTTAGACCGG
tactgat putative branch site (score: 2)
tttccat CT-rich tract
taatacctgatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaatagcatcctgtcccgatacttttttgtgagatttgtcaaatactcctacgtaaatagaagtagaaatcatttttttcatttaagtcttctaatacctgatataatttattttgctactgatttccatgtagGTGGACAATTGAAACAAAGTATTATTCAGCTGATCTTTCCATCTGGACAGCAAATCTTGGTGAAGAATTTTCTCTTGATTCCCTCCCTCATTTAGACCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA