Sequence
atgc intronic sequence ATGC exonic sequencegtaacttctttattgaaccagtattttgtcattaaatttactctacttcagaaaacctgacctggaaaaaactgcagAGACTGAACAAGGGGTGGCGCAGGCTATTCTTCGTGGAAATATCGATTTTAAGCGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G311220_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g61590.1 (Oryza sativa), 3'ss of exon 2
----gtaacttctttattgaaccagtattttgtcattaaatttactctacttcagaaaacctgacctggaaaaaactgcagAGACTGAACAAGGGGTGGCGCAGGCTATTCTTCGTGGAAATATCGATTTTAAGCGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCG
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gtatgttgcttttcttttaaaacctt-cgctatcattggctgtcatctccctcaaacaatctcgcctggaatttttt-cagAGACTGAGCAAGGGGTGGCACAAGCCATTCTTCGTGGAAATATCGATTTCAAACGCGAACCCTGGCCAAATGTTTCAGAAAATGCTAAAGATTTGGTTCG
upper sequence: GRMZM2G311220_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv08s0105g00390.t01 (Vitis vinifera), 3'ss of exon 2
--------------------gtaacttctttatt--gaaccagtattttgtcatt-----aaatttactctacttcagaaaacctgacctggaaaaaactgcagAGACTGAACAAGGGGTGGCGCAGGCTATTCTTCGTGGAAATATCGATTTTAAGCGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCG
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ggttgctttccttcctaatcctaggtgcaatgtttagagcctgtctttttttatctgtagaaatgctttccctttcatctaaagtgagtttttga----tgcagAGTCTGAACAAGGGGTTGCACAGGCTATTCTTCGTGGGCTAATAGATTTCAAAAGGGATCCATGGCCAAATATTTCAGAGAGTGCCAAGAGTCTAGTTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60338816|gb|DN205789.1|DN205789EST: GGGAGTTATCCTGTATATTTTATTATGTGGAGTCCCTCCATTTTGGGCTG AGACTGAACAAGGGGTGGCGCAGGCTATTCTTCGTGGAAATATCGATTTTA
genomic: GGGAGTTATCCTGTATATTTTATTATGTGGAGTCCCTCCATTTTGGGCTGgtaacttctt ... aaaactgcagAGACTGAACAAGGGGTGGCGCAGGCTATTCTTCGTGGAAATATCGATTTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttgtcattaaatttactctacttcagaaaacctgacctggaaaaaactgcagAGACTGAACAAGGGGTGGCGCAGGCTATTCTTCGTGGAAATATCGATTTTAAGCGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCG
acctgac putative branch site (score: 3)
attaaatttactcta TA-rich tract