1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtggcacatttagccacaaaccaaacaggccctaaatgccacatctcattgattagctattctgtatgtgcggcttacggtaaactcatgtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCGTGGTGCTGAATTTGAAGGGGCAGTCATTGCATTGTTCCATCTATTGATT
species | Zea mays |
transcript | GRMZM2G307252_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTATGGTTTGGGATCTGGCATCTCTCTGTTCATTGCTACGAATATCTG TGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCGEST: gi|211338839|gb|FL045916.1|FL045916
genomic: GGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatat ... gtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCG
EST: GGCTATGGTTTGGGATCTGGCATCTCTCTGTTCATTGCTACGAATATCTG TGAGAATATCATCTGGAAGGCGTTTASCC-AACAACCATCAACAGTGGGCGEST: gi|211304896|gb|FL147366.1|FL147366
genomic: GGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatat ... gtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCG
EST: GGCTATGGTTTGGGATCTGGCATCTCTCTGTTCATTGCTACGAATATCTG TGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCG
genomic: GGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatat ... gtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCG
ctcattgattagctattctgtatgtgcggcttacggtaaactcatgtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCGTGGTGCTGAATTTGAAGGGGCAGTCATTGCATTGTTCCATCTATTGATT
ggcttac putative branch site (score: 185)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggcacatttagccacaaaccaaacaggccctaaatgccacatctcattgattagctattctgtatgtgcggcttacggtaaactcatgtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCGTGGTGCTGAATTTGAAGGGGCAGTCATTGCATTGTTCCATCTATTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - gcacatt
- - - - - - - ccacaaa
- - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactca