1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgctttcttcaaactctgcatggatatctaagatgggaagtgatatttgtgaatgcagtgacattttatcagaattctacttttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTA
species | Zea mays |
transcript | GRMZM2G305332_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAG AATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGAEST: gi|93281998|gb|EB674262.1|EB674262
genomic: ATAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAGgtgctttctt ... ttttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
EST: ATAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAG AATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGAEST: gi|45568411|gb|CK986051.1|CK986051
genomic: ATAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAGgtgctttctt ... ttttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
EST: GCTCTGTACAAG AATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
genomic: GCTCTGTACAAGgtgctttctt ... ttttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
ggaagtgatatttgtgaatgcagtgacattttatcagaattctacttttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTA
ttctacttttttgc CT-rich tract
attttatcagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttcttcaaactctgcatggatatctaagatgggaagtgatatttgtgaatgcagtgacattttatcagaattctacttttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC