1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatggatatggtttttaccttgcatgattgacttaacttagtttcttgtatttatttgtgtaaattaaaatgagttcttttgttgtgcactaatctgcagGGAGTAAGCAAGGGAATAGTTGCCGAGAGGATACTTGCATCAGTGAAGGAGAGGGGAAAGCAGGCTGATTTCGTATTGTGCATCGGCGATGATAGGTCTG
species | Zea mays |
transcript | GRMZM2G304274_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACCAGTCTCTGTCAAGAGTGGACAGTTCATCGTTGAAGTCAAGCCACAG GGAGTAAGCAAGGGAATAGTTGCCGAGAGGATACTTGCATCAGTGAAGGAG
genomic: AACCAGTCTCTGTCAAGAGTGGACAGTTCATCGTTGAAGTCAAGCCACAGgttcgttcat ... taatctgcagGGAGTAAGCAAGGGAATAGTTGCCGAGAGGATACTTGCATCAGTGAAGGAG
ttgtatttatttgtgtaaattaaaatgagttcttttgttgtgcactaatctgcagGGAGTAAGCAAGGGAATAGTTGCCGAGAGGATACTTGCATCAGTGAAGGAGAGGGGAAAGCAGGCTGATTTCGTATTGTGCATCGGCGATGATAGGTCTG
cactaat putative branch site (score: 26)
tttatttgtgtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatggatatggtttttaccttgcatgattgacttaacttagtttcttgtatttatttgtgtaaattaaaatgagttcttttgttgtgcactaatctgcagGGAGTAAGCAAGGGAATAGTTGCCGAGAGGATACTTGCATCAGTGAAGGAGAGGGGAAAGCAGGCTGATTTCGTATTGTGCATCGGCGATGATAGGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - -tttcttg