Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87152581|gb|DY397370.1|DY397370EST: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAG ATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
genomic: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAGgtggtttcag ... tgggaagcagATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
EST:
gi|18963731|gb|BM660599.1|BM660599EST: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAG ATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
genomic: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAGgtggtttcag ... tgggaagcagATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
EST:
gi|76282665|gb|DV022233.1|DV022233EST: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAG ATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
genomic: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAGgtggtttcag ... tgggaagcagATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
EST:
gi|148963948|gb|EE015072.2|EE015072EST: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAG ATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
genomic: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAGgtggtttcag ... tgggaagcagATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
EST:
gi|32801966|gb|CD954202.1|CD954202EST: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAG ATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
genomic: AGCTGTTTGATATAATGCACACTGATGCTCTAGAGTACAAGAATCTTGAGgtggtttcag ... tgggaagcagATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtttcagagacaacggaaccctttatgtgatccttttatgctgaatttggtgaaaatgttgtggcatttatgttagctccatttgtttttgtgtatgcatgggaagcagATTTTGATCCTAGATGAGGCTGATAGGCTCTTGGATATGGGATTCCAGAAACATATTAACTTCATACTTTCAATGTTGCCAAAGCTGAGGAGGACTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA