1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcatagcatgatatataatcagacatgcaacttgcagatataatggttgatcacttcagtatacatgtaacagctgtaatgtttttacacttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG
species | Zea mays |
transcript | GRMZM2G303631_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|5325106|gb|AI783297.1|AI783297
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|211449604|gb|FL033165.1|FL033165
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: AGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTTGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|5325027|gb|AI783218.1|AI783218
genomic: AGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|211156293|gb|FL375842.1|FL375842
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: ATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTTGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|32850609|gb|CD990290.1|CD990290
genomic: ATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: AAAATGTGCAGAAACTGTCATCAAATCATTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|91054221|gb|EB164639.1|EB164639
genomic: AAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|5846840|gb|AI999923.1|AI999923
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGEST: gi|211229612|gb|FL380029.1|FL380029
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAG
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTEST: gi|211212797|gb|FL419176.1|FL419176
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
EST: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAG GTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
genomic: GGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccg ... cttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATT
ggttgatcacttcagtatacatgtaacagctgtaatgtttttacacttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG
atgtaac putative branch site (score: 3)
taatgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatagcatgatatataatcagacatgcaacttgcagatataatggttgatcacttcagtatacatgtaacagctgtaatgtttttacacttgaaatagGTCTGGATGTGAAGAAGGTCGATAAATGCATGGGAGACCCAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG