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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcttttgtgcaagatgtatgcctgtttgaaatcatgctttttaggctaccttacaaaggcgacacgtactacttagtaatttacttgttacctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG

Basic information

species Zea mays
transcript GRMZM2G181151_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 2
--------ctcttttgtgcaagatgtatgcctgtt-tgaaatcatgcttt-ttaggctaccttacaaaggcgacacgtactacttagtaatttacttgttacctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG
        || |   ||   ||   ||    |||  | | | ||  |||| | |  |  ||| | ||||  |   | ||||          ||  || ||   | |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
tgttccagctttccagtcttagtcataatgttgtgataacagcaacctttgtcaaacggcctaataaagatgttgcatact----------ttcttttttcaatttgcagAGTACAGGACTGTTTCTGGTGTGGCAGGACCTCTGGTTATCTTGGATAAAGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211464055|gb|FL062026.1|FL062026
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|32919410|gb|CF024222.1|CF024222
EST:     GTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GTGAAGGAAGGCGTCGACATGGAGGAGGGAA-CCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211464049|gb|FL062020.1|FL062020
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211045587|gb|FL062119.1|FL062119
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211474170|gb|FL062078.1|FL062078
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211223693|gb|FL399500.1|FL399500
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211279000|gb|FL407011.1|FL407011
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211469118|gb|FL062056.1|FL062056
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211476688|gb|FL062089.1|FL062089
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211466586|gb|FL062037.1|FL062037
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211131888|gb|FL371457.1|FL371457
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211471640|gb|FL062065.1|FL062065
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|8367004|gb|BE049949.1|BE049949
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACACGACTGTATCTGGTGTGGCCGGGCCTCTGGCTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211332062|gb|FL381794.1|FL381794
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|32851420|gb|CD991101.1|CD991101
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211124910|gb|FL425297.1|FL425297
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGCAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|33100666|gb|CF060626.1|CF060626
EST:     GTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GTGAAGGAAGGCGTCGACATGGAGGAGGGAACCC-TAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211461534|gb|FL062016.1|FL062016
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211250194|gb|FL420138.1|FL420138
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGCAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTAT
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTAT
EST: gi|211045584|gb|FL062116.1|FL062116
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211132918|gb|FL391883.1|FL391883
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211029340|gb|FL373997.1|FL373997
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211461533|gb|FL062015.1|FL062015
EST:     GGTGAAGGAAGGCGTCNACTTGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTA-AGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211172669|gb|FL375066.1|FL375066
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211464053|gb|FL062024.1|FL062024
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211439866|gb|FL422480.1|FL422480
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211427007|gb|FL427232.1|FL427232
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211034220|gb|FL370384.1|FL370384
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211459002|gb|FL061993.1|FL061993
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211332674|gb|FL416300.1|FL416300
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211466587|gb|FL062038.1|FL062038
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211466594|gb|FL062045.1|FL062045
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211448189|gb|FL410292.1|FL410292
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|24462502|gb|BM660033.1|BM660033
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaccttacaaaggcgacacgtactacttagtaatttacttgttacctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG
   accttac  putative branch site (score: 3)
                         tacttagtaattta  TA-rich tract