Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcttttgtgcaagatgtatgcctgtttgaaatcatgctttttaggctaccttacaaaggcgacacgtactacttagtaatttacttgttacctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 2
--------ctcttttgtgcaagatgtatgcctgtt-tgaaatcatgcttt-ttaggctaccttacaaaggcgacacgtactacttagtaatttacttgttacctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG
        || |   ||   ||   ||    |||  | | | ||  |||| | |  |  ||| | ||||  |   | ||||          ||  || ||   | |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
tgttccagctttccagtcttagtcataatgttgtgataacagcaacctttgtcaaacggcctaataaagatgttgcatact----------ttcttttttcaatttgcagAGTACAGGACTGTTTCTGGTGTGGCAGGACCTCTGGTTATCTTGGATAAAGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211182799|gb|FL070450.1|FL070450
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211182798|gb|FL070449.1|FL070449
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|8367004|gb|BE049949.1|BE049949
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACACGACTGTATCTGGTGTGGCCGGGCCTCTGGCTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTA-AGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaccttacaaaggcgacacgtactacttagtaatttacttgttacctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG
   accttac  putative branch site (score: 3)
                         tacttagtaattta  TA-rich tract