1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtattgaaaccaattcaattcaatgccctccaataccgacatccaaatggagcactagcttttcttttgtttaactgcacaatgtctttggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAG
species | Zea mays |
transcript | GRMZM2G180863_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAG GCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCGAATTTACTTACTEST: gi|74240297|gb|DT648211.1|DT648211
genomic: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAGgtactagctc ... ggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACT
EST: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAG GCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACTEST: gi|31354391|gb|CD438748.1|CD438748
genomic: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAGgtactagctc ... ggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACT
EST: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAG GCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACTEST: gi|149088668|gb|EE177786.2|EE177786
genomic: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAGgtactagctc ... ggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACT
EST: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAG GCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACT
genomic: CTATTACCGTTGTTATTCCATACTTTGGTTATGCCAGAGCAGACAGAAAGgtactagctc ... ggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACT
aaatggagcactagcttttcttttgtttaactgcacaatgtctttggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAG
tggtaac putative branch site (score: 2)
ttttcttttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtattgaaaccaattcaattcaatgccctccaataccgacatccaaatggagcactagcttttcttttgtttaactgcacaatgtctttggtaactcagGCTCAAGGGCGTGAACCCATTACTGCCAAACTTGCTGCAAATTTACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - -aaaccaa
- - - - - - - - - - - - - ccctcca
- - - - - - - - - - - - - - - - - - - - catccaa
- - - - - - - - - - - - - - - - - - - - - - - - tggagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcac