Sequence
atgc intronic sequence ATGC exonic sequence...aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaatgcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G007884_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 9
aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaat-gcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTAGAG-------------------------------------
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tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctga-cagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC
upper sequence: GRMZM2G007884_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 9
aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaat-gcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTAGAG-----------
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tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctga-cagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtaatgcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTAGAG
tttctttatttctctt CT-rich tract
tttctttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaatgcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT