1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgattttcacttgtcttctatatttgctattaccatctagttgcttggtgattgtttgaacatgttgtctgatcttctgcttttttaaatcattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCGCCTCTATGAGGTTATAGACACACCGGCTGATATTTATGTTGTTATGGA
species | Zea mays |
transcript | GRMZM2G180704_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCACCCACATATTATCCEST: gi|71768950|gb|DR966887.1|DR966887
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|211439527|gb|FL064919.1|FL064919
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCACCCACATATTATCCEST: gi|211439524|gb|FL064916.1|FL064916
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|148969836|gb|EE020728.2|EE020728
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|149088708|gb|EE177828.2|EE177828
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|149088317|gb|EE177414.2|EE177414
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|94473981|gb|EB702939.1|EB702939
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|211006231|gb|FL064937.1|FL064937
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|148974739|gb|EE025550.2|EE025550
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCEST: gi|93281926|gb|EB674190.1|EB674190
genomic: CAAGATTCTCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
EST: AAGATTCCTCA-CCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAG TTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
genomic: AAGATTC-TCAACCGCCGTAAAATCAGAGGCATGGAGATGGAAGAGAAAGgttggtgtct ... cattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCC
tggtgattgtttgaacatgttgtctgatcttctgcttttttaaatcattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCGCCTCTATGAGGTTATAGACACACCGGCTGATATTTATGTTGTTATGGA
gtctgat putative branch site (score: 418)
tcatttt putative PPT
ttttttaaatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattttcacttgtcttctatatttgctattaccatctagttgcttggtgattgtttgaacatgttgtctgatcttctgcttttttaaatcattttgcagTTAAAAGAGAGATTAAGATATTGAGGTTATTTATGCATCCACATATTATCCGCCTCTATGAGGTTATAGACACACCGGCTGATATTTATGTTGTTATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt