Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccggacggacgcttggtccctccctcccatgctcgctgcacatgctgcttttcgtagagacttgagacacggttgtgtttttggtgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGCCTCACGCTGCGTCTGATCGCTCGGACCCTCT

Basic information

species Zea mays
transcript GRMZM2G180659_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180659_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G06740.1 (Glycine max), 3'ss of exon 3
----gtacgccggacggacgcttggtccctccctcccatgctcgctgcacatgctgcttttcgtagagacttgagacacggttg-tgtttttg-gtgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGCCTCACGCTGCGTCTGATCGCTCGGACCCTCT
     |         | ||  |  |  |   | |  |     |  ||      |      |  |      |||     |  ||| | |   |   ||||| | ||||| |||||||| ||||||||||| ||||||||| |||| ||  |  ||||||||   ||         ||| ||  |  | |  || |   | |
tattctcaagttattgaactttaagaacaatcatttctcttccaatggtgtaacaatggcttatgttactttggcttccaattggtatcaatatatgcagCTATATGCAATGCCGGTTTTTGACATGATCGAGACCGTGATGGTTAAACAATTGCGCTTCAAGCCAACTTGGCAGCTACGATTTGTTGTGCGCAATGTTT

upper sequence: GRMZM2G180659_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G24520.1 (Glycine max), 3'ss of exon 3
------gtacgccggacggacgcttggtccctccctcccatgctcgctgcacatgctgcttttcgtagagactt-gagacacggttgtgttt-ttggtgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGCCTCACGCTGCGTCTGATCGCTCGGACCCTCT
       |  |     |  || |||        ||| | |   |         | |          || |   | |||  ||  || | ||| ||| || |||| ||||| ||||| |||||||||||||| || || ||| ||||||||||| ||  ||||   ||  |    || || ||| | || |  || | | | |
gtgaaattcagtttctcttactcttatctaaaaccttctaattttaacattggttcaaaaaactaaagtgctctagagtaactcttttttttgttgatgtagATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGT

upper sequence: GRMZM2G180659_T03 (Zea mays), 3'ss of exon 2
lower sequence: Vv01s0010g02700.t01 (Vitis vinifera), 3'ss of exon 3
gtacgccggacggacgcttggtccctccctcccatgctcgctgcacatgctgcttttcgtagagacttgagacacggttgtgtttttgg----tgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGCCTCACGCTGCGTCTGATCGCTCGGACCCTCT
                 |||    |    ||   | |       |  |  |   |||| | ||  ||| |    |   |  ||||  ||    ||||||||||||| ||||| |||||||||||| | |||||  || |||||||||| |||   |||   ||     ||| ||| ||||| ||  | || ||||| |
----------------gttgaaatcgaaatcttttccaaatgatatgtttt-tatttcattgaatcttcatttcctcataagtttgcgggaactgcagATCTATGCGATGCCAGTGTTTGACATGTTGGAGACATTGTTGGTGAAGAATCTGAAATTCAGACCATCTTTCATGCTTCGTCTTATTACCCGCACCCTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5510817|gb|AI857201.1|AI857201
EST:     TCGCGCTCGCCAACATGATGGTCGTCGTCCATGTCATCGGCAGCTACCAG                         ATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAG
genomic: TCGCGCTCGCCAACATGATGGTCGTCGTCCATGTCATCGGCAGCTACCAGgtacgccgga ... tttggtgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcacatgctgcttttcgtagagacttgagacacggttgtgtttttggtgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGCCTCACGCTGCGTCTGATCGCTCGGACCCTCT
                                         tgttttt  CT-rich tract
                                         tgttttt  TA-rich tract