Sequence
atgc intronic sequence ATGC exonic sequencegttggtctatataagttttccctccgttttatagctatccattttcgtcataactgaaagaaggtattcattttttttttcctgaagtcctaacagcacctgacaatcttgcagGCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGATCCGACCAATAATATATCTACTCGAGCTAGAAGGAAAATTATCATCAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G180155_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g03720.1 (Oryza sativa), 3'ss of exon 7
gttggtctatataagttttccctccgttttatagctatccattttcgtcataactgaaagaaggtattcattttttttttcctgaagtcctaacagcacctgacaatcttgcagGCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGATCCGACCAATAATATATCTACTCGAGCTAGAAGGAAAATTATCATCAGT----
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------------------------------------gttaatttctgtc-tattctcatgcttcaacccttttttggtcgtcttgattcctaacaatatctcata-tcttgcagGCATATACAAGTCAAATAGTAGTCATGGTGATGGTGGCCTTGGCTGTTGGATCTGATCAA----ATATCCACCCAAGTTAGACGTCAAGCTATCATCAGTGGTC
upper sequence: GRMZM2G180155_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g03900.1 (Oryza sativa), 3'ss of exon 7
gttggtctatataagttttccctccgttttatagctatccattttcgtcataactgaaagaaggtattcattttttttttcctgaagtcctaacagcacctgacaatcttgcagGCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGATCCGACCAATAATATATCTACTCGAGCTAGAAGGAAAATTATCATCAGT----
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------------------------------------gttaatttctgtc-tattctcatgcttcaacccttttttggtcattttgattcctaacagtttctc-ctatcttgcagGCATATACAAGTCAAATAGTAGTCATGGTGATGGTGGCCTTGGCTGTTGGATCTGATCAA----ATATCCACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13315872|gb|BG410220.1|BG410220EST: TAGAAGAACGCACTGCGGAGTCCATATCAATGCTGATTGCCGGTACAAAG GCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGA
genomic: TAGAAGAACGCACTGCGGAGTCCATATCAATGCTGATTGCCGGTACAAAGgttggtctat ... aatcttgcagGCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaggtattcattttttttttcctgaagtcctaacagcacctgacaatcttgcagGCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGATCCGACCAATAATATATCTACTCGAGCTAGAAGGAAAATTATCATCAGT
tattcatttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtctatataagttttccctccgttttatagctatccattttcgtcataactgaaagaaggtattcattttttttttcctgaagtcctaacagcacctgacaatcttgcagGCATATACAAGTCAAATAGTAGCAATGGTGATGATGGCGTTGGCTATCGGATCCGACCAATAATATATCTACTCGAGCTAGAAGGAAAATTATCATCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA