1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcatgttctttatcccaaatgataagatacttaaaagggttttctcaacatagcttgaattgagcaacaaaaggcaggatgggattgtattttatctaatttgagatgcacaccaatggaagaataagttcgttgagtaatgctgtttaatgttgtactcactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGCTTGCTCCAGTGGCTCGAGTTCACCAAACTAAATGGAATGGTTATTCAAG
species | Zea mays |
transcript | GRMZM2G179696_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAACCGAATATTGTCTTTCAG CTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGCEST: gi|148957360|gb|EC903409.2|EC903409
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
EST: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAG CTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGCEST: gi|22819893|gb|BU499983.1|BU499983
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGC
EST: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAACCGAATATTGTCTTTCAG CTGGAAGGAACAATCCTAGCTCCAACCCAGTGCTAAATCCTGGGGTTCAGGEST: gi|148980217|gb|EE027018.2|EE027018
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACAATCCTAGCTCCAACC-AGTGCTAAATCCTGGGGTTCAGG
EST: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAG CTGGAAGGAACA
genomic: GGCCAATCTCGTTCTCTGGGCCTTACTGCAAATCGAATATTGTCTTTCAGgtaagcatgt ... cactttgcagCTGGAAGGAACA
aatggaagaataagttcgttgagtaatgctgtttaatgttgtactcactttgcagCTGGAAGGAACAATCCTAGCTCCAACCAGTGCTAAATCCTGGGGTTCAGGCTTGCTCCAGTGGCTCGAGTTCACCAAACTAAATGGAATGGTTATTCAAG
tactcac putative branch site (score: 8)
ctcacttt CT-rich tract
tttaatgtt TA-rich tract