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...tgttttttccaaggaagtgaatattttatgatagcggtataccctttactgagttcatgatggcagttgttacatttctgtgatgtatccactctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAAACAAACATATTGAAGTGG
species | Zea mays |
transcript | GRMZM2G179459_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|149001142|gb|EE038404.2|EE038404
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|149088736|gb|EE177860.2|EE177860
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|149032717|gb|EE154943.2|EE154943
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|148996112|gb|EE035378.2|EE035378
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|211128000|gb|FL125817.1|FL125817
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|88757167|gb|DY541308.1|DY541308
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|149013869|gb|EE043354.2|EE043354
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|93014497|gb|EB640017.1|EB640017
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|211127986|gb|FL125803.1|FL125803
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|149085767|gb|EE175287.2|EE175287
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|101389748|gb|EB816808.1|EB816808
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|211127997|gb|FL125814.1|FL125814
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACMTAGTTARAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|149086994|gb|EE176539.2|EE176539
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|6564150|gb|AW231772.1|AW231772
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|148983017|gb|EE028919.2|EE028919
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|211127992|gb|FL125809.1|FL125809
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|21843563|gb|BQ704144.1|BQ704144
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|211127995|gb|FL125812.1|FL125812
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAEST: gi|148951274|gb|EC896976.2|EC896976
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
EST: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGG GATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
genomic: AGAGACATCAACAGCTTGAGAAATTGTATACTTCTACTCGTTCTGTAAGGgtaagaaggg ... actctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGA
ttactgagttcatgatggcagttgttacatttctgtgatgtatccactctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAAACAAACATATTGAAGTGG
tccactct CT-rich tract
ttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttttccaaggaagtgaatattttatgatagcggtataccctttactgagttcatgatggcagttgttacatttctgtgatgtatccactctaacagGATTTCCAGAAGGACATAGTTAGAGCAGCTGAAGGTTTGGTGTCTATTGGAAACAAACATATTGAAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG