1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacaattatgtctgccatataattccttggtggttttgatttccattcggaaagaaaaaagaatcagaaagtgacatgaaagaaactcttttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACGAAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAAT
species | Zea mays |
transcript | GRMZM2G179429_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGATEST: gi|71757661|gb|DR955598.1|DR955598
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|211266946|gb|FK962386.1|FK962386
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACEST: gi|50329493|gb|CO524619.1|CO524619
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|211271834|gb|FK962420.1|FK962420
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGAEST: gi|89248029|gb|DY619815.1|DY619815
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGA
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|31909721|gb|CD651061.1|CD651061
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|91057069|gb|EB167487.1|EB167487
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|91048409|gb|EB158827.1|EB158827
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|76014913|gb|DT942083.1|DT942083
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|211269390|gb|FK962402.1|FK962402
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAAC-TGCACGGGAT-CATGGAGGAGTAAEST: gi|211269397|gb|FK962409.1|FK962409
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAA
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|93283894|gb|EB676158.1|EB676158
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|18383735|gb|BM416935.1|BM416935
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGATEST: gi|211266949|gb|FK962389.1|FK962389
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACEST: gi|78112542|gb|DV530936.1|DV530936
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|18384245|gb|BM417444.1|BM417444
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGATEST: gi|148958245|gb|EC904458.2|EC904458
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|71307153|gb|DR789747.1|DR789747
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|71773571|gb|DR971469.1|DR971469
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|211269392|gb|FK962404.1|FK962404
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTEST: gi|211266944|gb|FK962384.1|FK962384
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGT
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAAACTGCACGGGATTCATGGAGGAGTAAAEST: gi|60357983|gb|DN224956.1|DN224956
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAA
EST: CAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|87153892|gb|DY398681.1|DY398681
genomic: CAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGATEST: gi|148956262|gb|EC902060.2|EC902060
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|211266948|gb|FK962388.1|FK962388
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGEST: gi|148959747|gb|EC905644.2|EC905644
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGG
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACEST: gi|148932548|gb|EC876363.2|EC876363
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGATEST: gi|211271831|gb|FK962417.1|FK962417
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGAC
EST: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAG GCCGAAGAACCTGCACGGGA
genomic: GATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGATGCAGCGTCAGgttggttact ... ttcttgcaagGCCGAAGAACCTGCACGGGA
ttcggaaagaaaaaagaatcagaaagtgacatgaaagaaactcttttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACGAAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAAT
ctcttttcttgc CT-rich tract
aaagaaaaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaattatgtctgccatataattccttggtggttttgatttccattcggaaagaaaaaagaatcagaaagtgacatgaaagaaactcttttcttgcaagGCCGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACGAAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - tgtctgc
- - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg