1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattatctgccctcatcgtctctcgttgcccacatagatatgtttccatggttcttatagattcttctctatgtttgcagATAAGATCAATGCAAAAATGGGAGAAG
species | Zea mays |
transcript | GRMZM2G179308_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211230015|gb|FL290150.1|FL290150
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAGGGATGGGCATTATGTTTT-GCTGTTGGAGATCACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGEST: gi|211192902|gb|FL091618.1|FL091618
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAG
EST: AGGGGATGGGCATTATGTTTTTGCYGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCNAAAATGGGAGAAGGTEST: gi|211232064|gb|FL290151.1|FL290151
genomic: AGGG-ATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAGGT
EST: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211232066|gb|FL290153.1|FL290153
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAGGKATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGAGAAGEST: gi|211232068|gb|FL290155.1|FL290155
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGGAGAAG
EST: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGCAAAAATGGGGAGAAGEST: gi|211232070|gb|FL290157.1|FL290157
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGCAAAAATGGG-AGAAG
EST: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCT ATAAGATCAATGC
genomic: CAGGGATGGGCATTATGTTTTTGCTGTTGGAGATAACCTCACATCTCGCTgtaattatct ... atgtttgcagATAAGATCAATGC
ttgcccacatagatatgtttccatggttcttatagattcttctctatgtttgcagATAAGATCAATGCAAAAATGGGAGAAG
ttcttctctatgttt CT-rich tract
ttatagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatctgccctcatcgtctctcgttgcccacatagatatgtttccatggttcttatagattcttctctatgtttgcagATAAGATCAATGCAAAAATGGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA