1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggtcatcggacaacatcagatcctcagcagtgttttggttttcttctaaagttattcagttgagagttctgtttggtcaaatcaaggactcacttttcttgctccttgtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATATGTGGTCTGTGGGCTGTATAATGGCTGAGCTTCTTGCCAAAGAACCGTTA
species | Zea mays |
transcript | GRMZM2G179097_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAG GGCCCCAGAACTGTTGTTAGGAEST: gi|211214733|gb|FL396537.1|FL396537
genomic: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatc ... gtggctacagGGCCCCAGAATTGTTGTTAGGA
EST: GGAAGCCCATTAAAACCTTATATTCAACTGGTTGTGACTTTGTGGTACAG GGCCCCAGAATTGTEST: gi|211527625|gb|FL412975.1|FL412975
genomic: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatc ... gtggctacagGGCCCCAGAATTGT
EST: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAG GGCCCCAGAATTGTT-T-AGGAACAAAGGAGTATTCTACTGCTATTGATATEST: gi|6056442|gb|AW090952.1|AW090952
genomic: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatc ... gtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATAT
EST: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAG GGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATATEST: gi|6020498|gb|AW065426.1|AW065426
genomic: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatc ... gtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATAT
EST: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAG GGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATATEST: gi|211055687|gb|FL451729.1|FL451729
genomic: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatc ... gtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATAT
EST: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAG GGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATAT
genomic: GGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatc ... gtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATAT
agagttctgtttggtcaaatcaaggactcacttttcttgctccttgtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATATGTGGTCTGTGGGCTGTATAATGGCTGAGCTTCTTGCCAAAGAACCGTTA
gactcac putative branch site (score: 2)
ctcacttttcttgctc CT-rich tract
aaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtcatcggacaacatcagatcctcagcagtgttttggttttcttctaaagttattcagttgagagttctgtttggtcaaatcaaggactcacttttcttgctccttgtggctacagGGCCCCAGAATTGTTGTTAGGAACAAAGGAGTATTCTACTGCTATTGATATGTGGTCTGTGGGCTGTATAATGGCTGAGCTTCTTGCCAAAGAACCGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC