1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtcactcttgtcgtgttttcgctctctttttaatctaatgccactactaagtctaatgttttttatcatccagTGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGGGTGCAGCAGATTTCCTTGTTAAACCGATAAGAAAGAATGAATTAAGGAA
species | Zea mays |
transcript | GRMZM2G179024_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTATCCACGATCATGGAACATGATGCGTCCAAGAACATCCCCGTTATAA TGATGTCTTTCGCATGACTCCGTAAGCATGGTTTTCAAATGCATGCTAAAGEST: gi|148939284|gb|EC883782.2|EC883782
genomic: GTTATCCACAATCATGGAGCATGATGCGTCCAAGAACATCCCTGTTATAAgtatgtcact ... tatcatccagTGATGTCTT-CGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAG
EST: GTTATCCACAATCATGGAGCATGATGCGTCCAAGAACATCCCTGTTATAA TGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGGEST: gi|148953113|gb|EE152594.2|EE152594
genomic: GTTATCCACAATCATGGAGCATGATGCGTCCAAGAACATCCCTGTTATAAgtatgtcact ... tatcatccagTGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGG
EST: GTTATCCACAATCATGGAGCATGATGCGTCCAAGAACATCCCTGTTATAA TGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGG
genomic: GTTATCCACAATCATGGAGCATGATGCGTCCAAGAACATCCCTGTTATAAgtatgtcact ... tatcatccagTGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGG
tcgctctctttttaatctaatgccactactaagtctaatgttttttatcatccagTGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGGGTGCAGCAGATTTCCTTGTTAAACCGATAAGAAAGAATGAATTAAGGAA
gtctaat putative branch site (score: 54)
ttttttatc CT-rich tract
taatgttttttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcactcttgtcgtgttttcgctctctttttaatctaatgccactactaagtctaatgttttttatcatccagTGATGTCTTCGCATGACTCAGTAAGCATGGTTTTCAAATGCATGCTAAAGGGTGCAGCAGATTTCCTTGTTAAACCGATAAGAAAGAATGAATTAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA