1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttatgctttaggattatcattgaaggtatttgtttgaataagttttagtcagtaaatcaatccatcgactgaaccttatttcttttgttttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTCGTAACACCCATCCTCCTGAACCTGAAGCTATTGATATGAACAATGATG
species | Zea mays |
transcript | GRMZM2G179002_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGEST: gi|91054809|gb|EB165227.1|EB165227
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGG
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTEST: gi|149111808|gb|EE190960.2|EE190960
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTEST: gi|211245109|gb|FL045400.1|FL045400
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCEST: gi|149009674|gb|EE041607.2|EE041607
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTC
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTEST: gi|148936630|gb|EC880754.2|EC880754
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTEST: gi|148992698|gb|EE033657.2|EE033657
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTEST: gi|148947125|gb|EC892437.2|EC892437
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
EST: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATAC GATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
genomic: ATCATTGGGGAGTTTCAGTCATGGTCATAGTGATTGTCTTCACAATATACgtaagtgttg ... tttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCT
tttagtcagtaaatcaatccatcgactgaaccttatttcttttgttttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTCGTAACACCCATCCTCCTGAACCTGAAGCTATTGATATGAACAATGATG
ccttatttcttttgtt CT-rich tract
ttatttcttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgctttaggattatcattgaaggtatttgtttgaataagttttagtcagtaaatcaatccatcgactgaaccttatttcttttgttttttttcagGATTTGACACTGCTCCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTCGTAACACCCATCCTCCTGAACCTGAAGCTATTGATATGAACAATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -tatgctt
- - - - - - - - - - - - - - - -ttgtttg