1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgcactttgccacatacattggcatgtgaatgaagaaattcaattctagttgctaacttgaaatattctaaatttcatttcttattttctcttcttgcagGGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG
species | Zea mays |
transcript | GRMZM2G178822_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATATTTTCCTGAAGTTATTATATTCCAGTCTATGCCACACATCTACAT GGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGTEST: gi|71328344|gb|DR800801.1|DR800801
genomic: CGATATTTTCCTGAAGTTATTATATTCCAGTCTATGCCAGACATCTACATgtaactccac ... cttcttgcagGGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGT
EST: CGATATTTTCCTGAAGTTATTATATTCCAGTCTATGCCAGACATCTACAT GGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGTEST: gi|149089320|gb|EE178543.2|EE178543
genomic: CGATATTTTCCTGAAGTTATTATATTCCAGTCTATGCCAGACATCTACATgtaactccac ... cttcttgcagGGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGT
EST: CGATATTTTCCTGAAGTTATTATATTCCAGTCTATGCCAGACATCTACAT GGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGT
genomic: CGATATTTTCCTGAAGTTATTATATTCCAGTCTATGCCAGACATCTACATgtaactccac ... cttcttgcagGGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGT
ctagttgctaacttgaaatattctaaatttcatttcttattttctcttcttgcagGGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG
tttcatttcttatttt CT-rich tract
taacttgaaatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcactttgccacatacattggcatgtgaatgaagaaattcaattctagttgctaacttgaaatattctaaatttcatttcttattttctcttcttgcagGGTTAATATATTTGCCATCTTCAGCCTACATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
tgcactt
- - - - - cacatac
- - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa