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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacattggcaattagtatttattttagaattcgcccctctttattaagataggagttaagagtatctgttattacttattatgcatttgcacttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG

Basic information

species Zea mays
transcript GRMZM2G178807_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819037|gb|BU499127.1|BU499127
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211404173|gb|FL329199.1|FL329199
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211404340|gb|FL336248.1|FL336248
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211294075|gb|FL367899.1|FL367899
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211058447|gb|FL334673.1|FL334673
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|148962866|gb|EE013792.2|EE013792
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211270703|gb|FL364931.1|FL364931
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211019167|gb|FL362495.1|FL362495
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGA
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGA
EST: gi|211309962|gb|FL324309.1|FL324309
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211465211|gb|FL336838.1|FL336838
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211049337|gb|FL322306.1|FL322306
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211149765|gb|FL359577.1|FL359577
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|21809687|gb|BQ668005.1|BQ668005
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGTGTTCGGTTGCAAGGGTGGGT
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAG-GCTCGGTTG-AAGGGTGGGT
EST: gi|40336077|gb|CK370147.1|CK370147
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|32842374|gb|CD982055.1|CD982055
EST:     ACGACGCCCAG                         GAGAAGGAGCTTGTGCACCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: ACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|101391784|gb|EB817821.1|EB817821
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|67018344|gb|CO447093.1|CO447093
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|22545710|gb|BU098069.1|BU098069
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|15632585|gb|BI679678.1|BI679678
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211320069|gb|FL327290.1|FL327290
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211331074|gb|FL338521.1|FL338521
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211388356|gb|FL321722.1|FL321722
EST:     GATCATATTTGCTCGCGCCAAGCAGTACCGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGA-GGGTGGGTTC
genomic: GATCATATTTGCTCGCGCCAAGCAGTAC-GCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211116311|gb|FL310194.1|FL310194
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTAAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|32840388|gb|CD980069.1|CD980069
EST:     GTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: GTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211036159|gb|FL345800.1|FL345800
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|148947939|gb|EC893437.2|EC893437
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211375660|gb|FL343002.1|FL343002
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211309959|gb|FL324306.1|FL324306
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|50328295|gb|CO523421.1|CO523421
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211231342|gb|FL356545.1|FL356545
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|113702123|gb|EE679627.1|EE679627
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTN
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211183807|gb|FL343285.1|FL343285
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211098730|gb|FL335597.1|FL335597
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211388669|gb|FL330062.1|FL330062
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|67023746|gb|CO452495.1|CO452495
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211052187|gb|FL320177.1|FL320177
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|71307122|gb|DR789735.1|DR789735
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211193013|gb|FL326452.1|FL326452
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211438494|gb|FL357614.1|FL357614
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGNAAGGGTNGGGT
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTG-AAGGGT-GGGT
EST: gi|5566791|gb|AI881657.1|AI881657
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211103246|gb|FL316732.1|FL316732
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211519509|gb|FL329285.1|FL329285
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211473188|gb|FL352558.1|FL352558
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|91872514|gb|EB402471.1|EB402471
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211514465|gb|FL316121.1|FL316121
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211101316|gb|FL340531.1|FL340531
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGARTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAARGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|148959152|gb|EE010619.2|EE010619
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211433379|gb|FL361081.1|FL361081
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|15660843|gb|BI698214.1|BI698214
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGC-TGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTC
EST: gi|211302645|gb|FL367969.1|FL367969
EST:     AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAG                         GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAAGGGTGGGTT
genomic: AGATCATATTTGCTCGCGCCAAGCAGTACGCCCAGGAGTACGACGCCCAGgtgagcacga ... acttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAA-GGGTGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagataggagttaagagtatctgttattacttattatgcatttgcacttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG
                     tgttattacttattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacattggcaattagtatttattttagaattcgcccctctttattaagataggagttaagagtatctgttattacttattatgcatttgcacttgtgcagGAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT