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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatctgaacctatactgtatggcagaattgcacaagatgttagtgattcccattgcttcacctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCAC

Basic information

species Zea mays
transcript GRMZM2G178546_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178546_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 3'ss of exon 1
gtatgtatctgaacctatactgtatggcagaattgcacaagatgt---------tagtgattcccattgcttcacctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCAC
|||||| | |||| ||||| | ||| || ||| | ||  | |  |         ||    || ||| || ||  | ||||||||||||| |||| |||||||| |  ||||||||||  |||  | |||||||  |  ||||||| |||||| |||| ||||| ||||| ||||| |||||||
gtatgtttttgaatctatagt-tattgctgaagtacatcaaacatggcaaacaataaaattttccactgtttttcttttgtagGTGAACCATCCATCTGCTTTAACATCATTTGAGGATATTGTTAATCTTGCCAGAGGTAAAAGATTGGCACTGTTCCTTGATTATGATGGAACTCTTTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31350805|gb|CD435162.1|CD435162
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|91871882|gb|EB401839.1|EB401839
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|31349982|gb|CD434339.1|CD434339
EST:     TCATCTGTCTTGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTCAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|19350662|gb|BM895194.1|BM895194
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|211365574|gb|FL253436.1|FL253436
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAAGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|19351740|gb|BM896272.1|BM896272
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|22491306|gb|BU051229.1|BU051229
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|149101959|gb|EE287477.2|EE287477
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|89252928|gb|DY624714.1|DY624714
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|148937901|gb|EC882124.2|EC882124
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
EST: gi|93281239|gb|EB673503.1|EB673503
EST:     TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACA                         GTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT
genomic: TCATCTGTGATGCTCAATCTGATCTTGATTTGCAATACTGCAACTGGACAgtatgtatct ... acctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtatggcagaattgcacaagatgttagtgattcccattgcttcacctttgtagGTGAACTATCCTTCTGCTTTGATCTCATTTGAGGCAATTAGTGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCAC
                                         cttcaccttt  CT-rich tract