Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71429185|gb|DR810235.1|DR810235EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTTTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|14646245|gb|BI180434.1|BI180434EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|91871988|gb|EB401945.1|EB401945EST: AATGGCGTTGGTCGTGGGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|50334100|gb|CO529226.1|CO529226EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|32838385|gb|CD978063.1|CD978063EST: A-TGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGT
EST:
gi|71329171|gb|DR801295.1|DR801295EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|14585624|gb|BI135376.1|BI135376EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|113701953|gb|EE679457.1|EE679457EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GTGAGCACCTTGGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagG-G------T-G--T--CTCCGGTACGCGGAATTCGTGGGATCCATCGACT
EST:
gi|86468088|gb|DY234458.1|DY234458EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|89760835|gb|DY689086.1|DY689086EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|32835984|gb|CD975662.1|CD975662EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTA
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTA
EST:
gi|71305902|gb|DR789076.1|DR789076EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTTTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|29945342|gb|CB815591.1|CB815591EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|78123556|gb|DV541940.1|DV541940EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|86467635|gb|DY234005.1|DY234005EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|71773042|gb|DR970960.1|DR970960EST: AATGGCGTTGGTCGTGGGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTTTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|213174206|gb|FM183972.1|FM183972EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|31909963|gb|CD651183.1|CD651183EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|71314423|gb|DR793839.1|DR793839EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTTTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|71320827|gb|DR797131.1|DR797131EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|32834864|gb|CD974542.1|CD974542EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGT
EST:
gi|78124669|gb|DV543053.1|DV543053EST: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCT
EST:
gi|32838411|gb|CD978089.1|CD978089EST: A-TGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGA GGTGTCTCCGGT
genomic: AATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
46 (upstream exon),
48 (downstream exon)
Score:
59AAAATCGGTGATGAAGCTTCTGGAATCTGTGGGAGTCGAATAGCCGCAAAAATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCTTCACGTGCTCCCCGAATAATGCGACGGTCTCCATCCTCGCCGATCCCGG
Block sizes:
48 (upstream exon),
48 (downstream exon)
Score:
63AAAATCGGTGATGAAGCTTCTGGAATCTGTGGGAGTCGAATAGCCGCAAAAATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCTTCACGTGCTCCCCGAATAATGCGACGGTCTCCATCCTCGCCGATCCCGG
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
61AAAATCGGTGATGAAGCTTCTGGAATCTGTGGGAGTCGAATAGCCGCAAAAATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCTTCACGTGCTCCCCGAATAATGCGACGGTCTCCATCCTCGCCGATCCCGG
Block sizes:
48 (upstream exon),
47 (downstream exon)
Score:
69AAAATCGGTGATGAAGCTTCTGGAATCTGTGGGAGTCGAATAGCCGCAAAAATGGCGTTGGTCGTGCGAATTTACAGAGCCTCGTTTTGGCGGCGATAGAgtgagcacct ... atgattgcagGGTGTCTCCGGTACGCGGAATTCGTGGGATCCATCGACTGCCGCGACGCCTTCACGTGCTCCCCGAATAATGCGACGGTCTCCATCCTCGCCGATCCCGG