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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgggctgcccggccccttcggttctccagtctcttccggagttcgctgccgcccccgagcattagtctaatcttgggttcgattccgggccactctgcctcacttcgtcctccctctcctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATG

Basic information

species Zea mays
transcript GRMZM2G177912_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177912_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 2
gtatgtgtgggctgcccggccccttcggttctccagtctcttccggagttcgctgccgcccccgagcattagtctaatcttgggttcgattccgggccactctgcctcacttcgtcctccctctcctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATG
                                            | |   |    |  | |     |   |     ||||     | |   ||  ||      ||    | |  |  |||  |  || |  ||||| ||||| ||| ||||||| || |||||||||||||||||||||||||| || || ||||||||||| || ||||| || ||||| |||||||| || |
--------------------------------------------gtaacccatctcttctcttctccccgatctcgatctcc--cttgccccccagctctcacgcgattcctattattcctgccgctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211359331|gb|FL325567.1|FL325567
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|71327563|gb|DR800390.1|DR800390
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|9953349|gb|BE639932.1|BE639932
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|78120131|gb|DV538515.1|DV538515
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211542143|gb|FL390828.1|FL390828
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTT
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTT
EST: gi|211218538|gb|FL338330.1|FL338330
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGS-ATGAYCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAG-CAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211114226|gb|FL350275.1|FL350275
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGAWCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211267792|gb|FL344631.1|FL344631
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211217973|gb|FL307283.1|FL307283
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|71303539|gb|DR787880.1|DR787880
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|8367294|gb|BE050239.1|BE050239
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211362192|gb|FL333555.1|FL333555
EST:     GCGTCGGCACCCTCGACTCCCTCSTYGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|148969238|gb|EE019992.2|EE019992
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|149104624|gb|EE290073.2|EE290073
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211316704|gb|FL359227.1|FL359227
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTTGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|67016433|gb|CO445182.1|CO445182
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211105804|gb|FL320712.1|FL320712
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211283545|gb|FL347777.1|FL347777
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211064773|gb|FL350726.1|FL350726
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211460898|gb|FL364621.1|FL364621
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211078718|gb|FL360383.1|FL360383
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCAAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|76288290|gb|DV027858.1|DV027858
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211414492|gb|FL334083.1|FL334083
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211381249|gb|FL356117.1|FL356117
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
EST: gi|211467481|gb|FL327941.1|FL327941
EST:     GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG                         TCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA
genomic: GCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgg ... cctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggttcgattccgggccactctgcctcacttcgtcctccctctcctccgccagTCAAACGTGTTCGTCGAGGGCGTTTCGCACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATG
                        gcctcac  putative branch site (score: 3)
                 ccactctgcctcactt  CT-rich tract