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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

Basic information

species Zea mays
transcript GRMZM2G177005_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2
---agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
    |  | |||     | | ||    | | |    |     |||     ||         ||| | |   | | ||| ||  | |||       | |  |||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || || ||||| 
cctcggtgttcatgactaccctttgtgttgagagcttgaggctactcctaagctgcctactttggattacaattctga-tatctcttg--ttggtgttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatt---tttgggccaccgat--------ttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
       ||  |  |  |  ||||||  | || |   |||||  |       | | |||| ||  || | |||||| ||||   | ||     ||| |        | ||| |||||||| || |||||||||||||| ||||| ||||| |||||||||||||| || || ||| | ||  | || ||||| |||||||| || ||||| 
----atgcatttttagttcactcctgttgattatgaatttactaa-------tagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G37320.1 (Glycine max), 3'ss of exon 1
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaattt---ttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
      | |  ||  |  ||   |     || ||   |  |           | |   ||     || | | ||||    |    |||| |      ||  || |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| || || || ||| | ||  | ||||| || |||||||| || ||||| 
---tttttaactgagagattgctcaactcttactggataaatgtgtttaatctcgattttagttattgaatatgacctgctgaaattggactgttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGACTCATTGTTGGCATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 2
-agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttt-tgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
   || ||    |||   |     || || ||| || || |  |   ||    |||   ||    ||  | |   ||| |||   |    |  |   | ||| || ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || |||||||| |||||||| |||||||| 
atatatctt-tttgcctttactagcttgcatttgttgttgtgaatttgaca-gtggattttccttttacaataatactgattaagtcaatctacttctacagAGCCAATGCACAACAACCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCACTTGCCCTTTATGGTCTCATTGTTGGTATTATCCTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G05630.1 (Glycine max), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattt-tagtttgacta--atttttgggccaccgattt-cagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
   |  |||  |     |  ||||||  | || |   |||||  | |     |     || |  ||   |  |||| ||  | ||   ||  ||   ||| ||| |||||||| || ||||| || ||||| ||||| ||||| |||||||||||||| || || ||  | ||  | |||||||| || ||||| || ||||| 
---acgtcatgt-tggttcactcctgttgattatgaatttactaatggtattttaagcttaattttaacaaattgaatatgacttgccggtaactcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAGGCATTGGCATTATATGGTCTCATCGTTGGCATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
-agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattt-tagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
 |  |  |  | |    | || | || || |  | | | ||    |   | |   ||| ||    |||  | |   ||| |||  |    |  |   | ||| || ||||| || |||||||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||| 
gaacatatatctttttgcctt-tactagcatg-catttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 2
--agtagctcacatgcaactttctcc-tggcgtttcttcttttacagaggaggcatgggaattgaaatttta-gtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
    ||  |  |    |  ||  | | |||   | | | || ||  ||      || | ||||  |  || | ||||||  |||||      |  |   | ||| || ||||| || |||||||||||||| ||||| ||||| ||||| ||||| || || || || ||||| || ||||| || |||||||| |||||||| 
tgtatattttgctgatagtttgatacatggatataccttttataatgattcctaatagaaattttaccttgaagtttgaacaattt----atcttcttatgcagAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgattt-------cagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
      | |     || ||| | | ||  | |  | ||||| |  |     ||    | | ||||| |  |||     |  ||||  | |   || |       ||| || ||||| || |||||||||||||| ||||| ||||| || || |||||||| || ||||| ||||||||||||||||| |||||||| |||||||| 
---cattgatggttaattttatacagggatatagt-ttttataatga---tattcctaataaaattcttattttgaagaagtttgaacaatttatcttcttccgcagAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTTATTCTCATTTTTGCTGAAGCTCTTGCTCTCTATGGTCTCATTGTTGGTATTATCCTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G07980.1 (Glycine max), 3'ss of exon 1
agtagctcacatgcaactttctcctggcgtttcttc---ttttacagaggaggcatggg-aattgaaattttagtt--tgacta----atttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
          | ||    ||  ||  | | || |||   | |||| |        ||   || |   |||||||||  ||| |     ||  |           ||  || |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| || || || ||| | ||  | ||||| || |||||||| || ||||| 
----------acgctttgttaaccaagagattgttcaactcttactggatgattgtgtctaacttctattttagttattgaatttgacatgctgaaaatgttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGACTCATTGTTGGCATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgac---taatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
  |  ||   ||| ||  |  |    |   |     ||  |  | |   |  |      ||  || | | |||||     || |||  ||     |||  |||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||| || ||||| || || || || ||  | 
-ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggt--ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------------------------------agtagctcacatgcaacttt-ctcctggcgtttc---ttcttttacagaggaggcatggga-------attgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                                                                                 |||||    ||     | || | ||||  | ||    ||||||||||        ||| ||       ||| | |  |  ||||   |||| |    | |     || ||| || ||||||||||| || ||||| || || || ||||| || || ||||| || || ||||||||||| || |||||||| |||||||| || ||||| 
gtaacgttgtttgatattagatttggtgttggttaagaactgtctggattgaatctttgaagcagattaggataaattaccagtagaattcaacaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G34720.1 (Arabidopsis thaliana), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccac-cgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
      |  |   |  | | || ||   | | |  |||| |   |  | | | |  |  | | |||   |||||||| |   ||  || |  |  ||||||||||||||| || ||||| ||||| || ||||| ||||| || ||||| ||||||||||||||||||||||| || || || ||||| ||||| || |||
---gtttgtctctcgtcctcctgctactgatacg-ctttgaggtattatggaagatatgtaacattggtgtttgacttacccttttgcgattctttttcagGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTATTTTCGCAGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G16510.1 (Arabidopsis thaliana), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatt---tcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                 ||  ||||  |      | ||| | |  | |  | |     |   |  | ||  ||||||  |||||||     |||||   ||||||||||||| || ||||| ||||| || ||||| ||||| || ||||| || || || |||||||| ||||| || || |||||||| || || ||  | 
---------------gtttgttcctcacagagaatgtttga-atggaaaacgttaacgtc--atctgtatcttgacttgtttttggttttgcgattctctcagGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCTTATCTTTGCGGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATTTTA

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
---agtagctcacatgcaactttctcctggcgtttcttcttttac-agaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
    |     ||| ||   |||| |  |     || | | |  || | | | | ||     ||| | |  |  ||||   |||| |    | |     || ||| || ||||||||||| || ||||| || || || ||||| || || ||||| || || ||||||||||| || |||||||| |||||||| || ||||| 
acaggcgttgcacctgatgctttgtttt----cttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 2
------agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
      | |||      |||   |  ||  |  | | | |||  ||  |       | |   |    |  |||| || ||| |  || ||          || ||| || ||||| || |||||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| || ||||| || |||||||| || ||||| 
tttcatattaggatttctgcctttgcctttttacatctattcaattctatttatttcctttaagagtatgtttttgtctgaattgttgttatat------ttgcagAGCCAATGCTCAGCAGCCAAAGCTTTTCGTTGGAATGATCCTCATTCTCATCTTTGCTGAAGCTCTTGCCCTGTATGGACTTATTGTTGGCATCATCCTA

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 2
-agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
 | |          | |||||    |   ||| |||    |   ||  |    |  |     |    | |   | | |    | |  |       || |||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||| || || ||||| || || || || || || |||||||| |||||| | 
gactgtactttggacgactttaggataa-gttgctttggctgaggacaaattctttgttagtaggactaatcataatttgaatctatgatttgttttgcagGGCTAATGCGCAGCAGCCTAAACTTTTTGTTGGTATGATCCTCATTCTCATCTTTGCTGAAGCACTGGCCCTATACGGCCTTATTGTTGGCATTATCTTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
-agtagctcacatgcaactttctcc----tggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
   |  ||| | | |  | |  |      ||     ||   |  | ||  |  ||  | | |  ||   |||   |||       | |||||  |    ||||||||| ||||| || ||||||||||| || || || ||||| ||||||||||| || || |||||||||||||| ||||| || ||||| || || || |||
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatg---tttaccttttttcccctgttggg--attattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------------------------------------------------------------agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggc---caccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                                                                                                      ||     |||||    ||      |  |     |   |||  |  | |    | |  |||    | | |||    |||  |   ||    || || || |||||| ||||| || ||||| ||||| ||||| || |||||||| |||||||||||||| || ||||||||  | ||||| || || || || |||||| | 
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgag---gatgcagagtgagttatgggagggtttggtgtgttgtggatgtggtt--gttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------------------------------------------------------------agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggc---caccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                                                                                                      ||     |||||    ||      |  |     |   ||   |  | |    | |  |||    | | |||    |||  |   ||    || || || |||||| ||||| || ||||| ||||| ||||| || |||||||| |||||||||||||| || ||||||||  | ||||| || || || || |||||| | 
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgag---gatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggtt--gttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------agtagctcacatgcaactttct----cctggcgtttcttctttta----cagaggaggc-------atgggaattga-aattttagtttgactaatttttgggccaccgattt---cagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                                                                      |      || ||| |        | |  ||||  | |   |     | ||||| ||       |||  | |||   ||  |    |   ||| ||   ||     | |||   |||||| |||||||||||||| ||||| || || || |||||||| || || |||||||| || ||||| ||| | || || || || || || || || || 
gtacttgacaaagccttgcaatgtggcgatgtaccaaaatacgttttgaagttggagtcaatagtctgccaatctggattcaattcgtagaggctttacgttcatgcacgtgatatctgaggatgctgagttgatgccatttgttgatcatgtccttgttaacttggaggatggggttttgtgcagGGCCAATGCGCAACAGCCCAAGCTGTTTGTAGGAATGATCCTGATTCTGATTTTCGCCGAGGCGCTGGCTTTATACGGACTTATCGTGGGTATCATTCTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 2
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                            ||   |||  |     |  || |||     ||       ||  |  | | |||  |  |       || |||||| |||||||| || || |||||||| ||||| ||||||||||| ||||| || || || ||  | ||||| || ||||| ||||| ||||| ||||| 
----------------------------gtaagttcgatcgatcaaaagccatctt--tttcttcgatatctccattgattggtttgtttttctttgcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTCATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ37480 (Selaginella moellendorffii), 3'ss of exon 2
---agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttca--gGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
   | | |   |     | |||  ||||  |     |||  |    ||     ||      ||     | | | ||    | |||     ||| || |||||  |||| || || |||||||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| |||||||| ||  | || || || || || |||
atcatttgaagatcgcgagcttggtcctcacaagatttccctgctggaaactccactctgttttcttctctggctttctcacttt-----ccatcgttttcacagGGCCAACGCTCAACAGCCAAAGCTCTTCGTGGGCATGATCTTGATCCTCATCTTCGCCGAGGCGCTGGCTCTCTACGGATTGATCGTGGGGATCATTCTT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 2
---agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttca--gGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
   | | |   |   | | |||  ||||  |     |||  |    ||     ||      ||     | | | ||    | |||     ||| || |||||  |||| || || |||||||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| |||||||| ||  | || || || || || |||
atcatttgaagatcgggagcttggtcctcacaagatttccctgctggaaactccactctgttttcttctctggctttctcacttt-----ccatcgttttcacagGGCCAACGCTCAACAGCCAAAGCTCTTCGTGGGCATGATCTTGATCCTCATCTTCGCCGAGGCGCTGGCTCTCTACGGATTGATCGTGGGGATCATTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149069779|gb|EE158164.2|EE158164
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32919305|gb|CF024117.1|CF024117
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGGTCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|37377497|gb|CF625358.1|CF625358
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18163718|gb|BM333557.1|BM333557
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|37378647|gb|CF626025.1|CF626025
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|67015428|gb|CO444177.1|CO444177
EST:     GGGCTTGCAGCTGGCATGTCCATCGGCATTGTCGGTGATGCTGGAGTCAT                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32926556|gb|CF031368.1|CF031368
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|71595816|gb|DR906567.1|DR906567
EST:     GGGCTTGCAGCTGGCATGGCCATCGGAATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18171150|gb|BM340990.1|BM340990
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18167517|gb|BM337356.1|BM337356
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18180502|gb|BM381712.1|BM381712
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18164400|gb|BM334239.1|BM334239
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|28910017|gb|CB331215.1|CB331215
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18165853|gb|BM335692.1|BM335692
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|149085640|gb|EE175154.2|EE175154
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18173789|gb|BM349177.1|BM349177
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|148941577|gb|EC886514.2|EC886514
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTTTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|211469779|gb|FL205749.1|FL205749
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32862577|gb|CF002259.1|CF002259
EST:     GCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|211459668|gb|FL205694.1|FL205694
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32850588|gb|CD990269.1|CD990269
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18175812|gb|BM350992.1|BM350992
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|24769829|gb|CA404958.1|CA404958
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|44901521|gb|CK828066.1|CK828066
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|149087196|gb|EE176733.2|EE176733
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|28909989|gb|CB331201.1|CB331201
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|8367059|gb|BE050004.1|BE050004
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|15100422|gb|BI396213.1|BI396213
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|9794799|gb|BE553107.1|BE553107
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32926631|gb|CF031443.1|CF031443
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|17932288|gb|BM269248.1|BM269248
EST:     GGCTTGCAGCTGGCATGGCCATCGGCATTGTCCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGCTTGCAGCTGGCATGGCCATCGGCATTGT-CGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32835879|gb|CD975557.1|CD975557
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18164113|gb|BM333952.1|BM333952
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTAATGCTGAAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|149004954|gb|EE039470.2|EE039470
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|28910924|gb|CB331683.1|CB331683
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|33103103|gb|CF063063.1|CF063063
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|16379598|gb|BI993039.1|BI993039
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|148941578|gb|EC886515.2|EC886515
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|116826434|gb|EC870222.1|EC870222
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCA-                         -G-NAATGCGCAACAGCCAAAGCTTTTTGTCGGCATGATCCTCATCCTTAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|149105079|gb|EE290560.2|EE290560
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18163965|gb|BM333804.1|BM333804
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|211462192|gb|FL205708.1|FL205708
EST:     GGCTTGCAGCTGGCATCGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGGCAAATGCGCAACAGC
genomic: GGCTTGCAGCTGGCAT-GGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGG-CAAATGCGCAACAGC
EST: gi|31355220|gb|CD439577.1|CD439577
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGGGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCGT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18164114|gb|BM333953.1|BM333953
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|211469786|gb|FL205756.1|FL205756
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18172255|gb|BM347643.1|BM347643
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|149087197|gb|EE176734.2|EE176734
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|47962337|gb|CN845046.1|CN845046
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|17929435|gb|BM266395.1|BM266395
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|60349406|gb|DN216379.1|DN216379
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|60342949|gb|DN209922.1|DN209922
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|17929927|gb|BM266887.1|BM266887
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|7145378|gb|AW506859.1|AW506859
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32925545|gb|CF030357.1|CF030357
EST:     CAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: CAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18171123|gb|BM340963.1|BM340963
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|67017850|gb|CO446599.1|CO446599
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|211459663|gb|FL205689.1|FL205689
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|32940017|gb|CF044836.1|CF044836
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTCGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|37396741|gb|CF635664.1|CF635664
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|17930826|gb|BM267786.1|BM267786
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|60337574|gb|DN204547.1|DN204547
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|18170503|gb|BM340343.1|BM340343
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
EST: gi|16922183|gb|BM075464.1|BM075464
EST:     GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAG                         GGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT
genomic: GGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 296

TCTTTGATGGCTACGCCCACCTTTCGTCCGGGCTTGCCTGTGGTCTCGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 650

TCTTTGATGGCTACGCCCACCTTTCGTCCGGGCTTGCCTGTGGTCTCGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 556

TCTTTGATGGCTACGCCCACCTTTCGTCCGGGCTTGCCTGTGGTCTCGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 591

TCTTTGATGGCTACGCCCACCTTTCGTCCGGGCTTGCCTGTGGTCTCGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTCGGTGATGCTGGAGTCAGgtaaaaggct ... ccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT
                            gactaat  putative branch site (score: 591)
           aattgaaattttagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - acatgca
- - - - - - - - - - ctcctgg
- - - - - - - - - - - - - - - - - - - - - - - -aggcatg