1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttttatgttcctaaaacactccattttttttcaaatgtctatttctctgagactagctaacatttttctccttcctattttttctctgttttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGG
species | Zea mays |
transcript | GRMZM2G177001_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGEST: gi|60400937|gb|DN233744.1|DN233744
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGEST: gi|149098711|gb|EE184722.2|EE184722
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGEST: gi|71438922|gb|DR819972.1|DR819972
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGEST: gi|211051931|gb|FL422541.1|FL422541
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGEST: gi|60396221|gb|DN229090.1|DN229090
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGEST: gi|6564129|gb|AW231751.1|AW231751
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
EST: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGG GCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
genomic: AGGCTGATAAGGCTGTGACTACATACCACAACAAGCGCACACTACCTGGGgtatgtaacc ... tttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTG
ctctgagactagctaacatttttctccttcctattttttctctgttttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGG
agctaac putative branch site (score: 40)
ctaacatttttctcct CT-rich tract
tattttttctctgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttatgttcctaaaacactccattttttttcaaatgtctatttctctgagactagctaacatttttctccttcctattttttctctgttttaaattagGCCTCAAGTCCATTGCAAGTAAAATATGCCGATGGGGAGTTGGAAAGATTGG
- - - tgttcct
- - - - - - - - -cactcca