1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aataaatatctcatttaagcaagctctacatatatgatatatagaaatcgtagcaatttacgggcaaactaactagtaaaaccttatgtgtctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTCGGAGGCAACAACCGGGCACATGCTTTCTTCAAGCAGCATGGATGGACC
species | Zea mays |
transcript | GRMZM2G176612_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|50324070|gb|CO519196.1|CO519196
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|26456800|gb|CA828383.1|CA828383
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|26559842|gb|CA832077.1|CA832077
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|20506864|gb|BQ279378.1|BQ279378
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|91875558|gb|EB405515.1|EB405515
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|211533911|gb|FL193997.1|FL193997
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|71325907|gb|DR799636.1|DR799636
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|148971581|gb|EE022297.2|EE022297
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|93015029|gb|EB640549.1|EB640549
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|149103312|gb|EE288690.2|EE288690
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|148962572|gb|EE013450.2|EE013450
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|101384752|gb|EB814422.1|EB814422
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|22819543|gb|BU499633.1|BU499633
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|31355549|gb|CD439906.1|CD439906
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|148950095|gb|EC895631.2|EC895631
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|78119544|gb|DV537928.1|DV537928
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTEST: gi|87157844|gb|DY402633.1|DY402633
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|149074062|gb|EE162404.2|EE162404
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|60395607|gb|DN228477.1|DN228477
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTEST: gi|71317539|gb|DR795496.1|DR795496
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
EST: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAG GTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
genomic: GACTGCTCCGCCGCCCACCGCAGCCTCGGGGTCCACATCACCTTCGTCAGgtaccgtacc ... tctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATT
aatcgtagcaatttacgggcaaactaactagtaaaaccttatgtgtctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTCGGAGGCAACAACCGGGCACATGCTTTCTTCAAGCAGCATGGATGGACC
aactaac putative branch site (score: 1)
tgtctttc putative PPT
tagtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaatatctcatttaagcaagctctacatatatgatatatagaaatcgtagcaatttacgggcaaactaactagtaaaaccttatgtgtctttcgcagGTCAACGAACCTCGACTCATGGACTCCAGACCAGCTGAAGATGATGGCATTCGGAGGCAACAACCGGGCACATGCTTTCTTCAAGCAGCATGGATGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA