Sequence
atgc intronic sequence ATGC exonic sequence...atggtgcatccttgtattcttgtttgcggaattagaaacttcaagattgattggttatgcattttctgaactaacaggaattgacctttatggtttgtagGTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCTCGCCAGTGATCTGTCCACCGCAGAGGAAGCTGTATAATTCTATTAGTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G176542_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g67420.1 (Oryza sativa), 3'ss of exon 12
atggtgcatcc-ttgtattcttgtttgcggaattagaaacttcaagattgattggttatgcatttt-ctgaactaacaggaattgacctttatggtttgtagGTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCTCGCCAGTGATCTGTCCACCGCAGAGGAAGCTGTATAATTCTATTAGTGC-
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tcgttacaaggatcttatgcataattatttggttatggtgct-agtatttttcagtggtgtatttttctggactaa-aataattgatgctattgctttatagGTGCCACTATGCCATGCAAAGGGTTATAGAAACTCGGAAAAGGGCAT-GCTAATTCATGATTCGTCCACCAGAGATGATACTGTGTGAAGTTAATTTTGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76290975|gb|DV030543.1|DV030543EST: ATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAG GTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCT
genomic: ATGGACCTTGTTGTGACACATCACATGTTCCTTGATCATCTCCCTTGGAGgtatgtccta ... tggtttgtagGTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgattggttatgcattttctgaactaacaggaattgacctttatggtttgtagGTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCTCGCCAGTGATCTGTCCACCGCAGAGGAAGCTGTATAATTCTATTAGTGC
cctttat CT-rich tract
attttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggtgcatccttgtattcttgtttgcggaattagaaacttcaagattgattggttatgcattttctgaactaacaggaattgacctttatggtttgtagGTGCCACTATGCCATGCAAAAGGTCATAGAAACACGAAAACGGGATCAGCTCGCCAGTGATCTGTCCACCGCAGAGGAAGCTGTATAATTCTATTAGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - tgcatcc
- - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa