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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatcaaacagagctttgtattgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacagGACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAG

Basic information

species Zea mays
transcript GRMZM2G176506_T07
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176506_T07 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 3'ss of exon 2
gtagaatcaaacagagctttgtattgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttat-ttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactga----tcattttgaactgat-cacagGACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAG
                         |||||||||||||||| | |||   || | |||||||     ||| | | | ||| | | ||||| |||| |   ||| | || ||||| |   ||| |||| |  |  |     | |||||||| |||| |||||||||||| |||  |||||| ||||||| || || ||||||||||||||||||  |||| ||||||
-------------------------gtgagttatttgcataatctgt---ttgtattgttgt-----tgttttgacgtatatctcgtgttcaaaataa-atatatgcatttcattccctctttattaattgagagcagttttattttgaaatgattcacagGACTGACCCCCATTTGCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78080958|gb|DV509370.1|DV509370
EST:     TGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCG                         GACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTT
genomic: TGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGgtagaatcaa ... ctgatcacagGACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacagGACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAG
                                           aactgat  putative branch site (score: 3)
                   ttcattattaaact  TA-rich tract