1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatattaacagctgagttactgggcaaacatctttgcgcgcgtgccccatggtccatgctgctcgtgggcaccgatagatcgacccgacctgcggcgtgcattagagctcatggccgaacgaactgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTTGACGAGATCA
species | Zea mays |
transcript | GRMZM2G176289_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGEST: gi|149112481|gb|EE295353.2|EE295353
genomic: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
genomic: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
tcgacccgacctgcggcgtgcattagagctcatggccgaacgaactgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTTGACGAGATCA
aactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattaacagctgagttactgggcaaacatctttgcgcgcgtgccccatggtccatgctgctcgtgggcaccgatagatcgacccgacctgcggcgtgcattagagctcatggccgaacgaactgacgtacagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTTGACGAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA